MIT Latest News

How the brain distinguishes oozing fluids from solid objects
Imagine a ball bouncing down a flight of stairs. Now think about a cascade of water flowing down those same stairs. The ball and the water behave very differently, and it turns out that your brain has different regions for processing visual information about each type of physical matter.
In a new study, MIT neuroscientists have identified parts of the brain’s visual cortex that respond preferentially when you look at “things” — that is, rigid or deformable objects like a bouncing ball. Other brain regions are more activated when looking at “stuff” — liquids or granular substances such as sand.
This distinction, which has never been seen in the brain before, may help the brain plan how to interact with different kinds of physical materials, the researchers say.
“When you’re looking at some fluid or gooey stuff, you engage with it in different way than you do with a rigid object. With a rigid object, you might pick it up or grasp it, whereas with fluid or gooey stuff, you probably are going to have to use a tool to deal with it,” says Nancy Kanwisher, the Walter A. Rosenblith Professor of Cognitive Neuroscience; a member of the McGovern Institute for Brain Research and MIT’s Center for Brains, Minds, and Machines; and the senior author of the study.
MIT postdoc Vivian Paulun, who is joining the faculty of the University of Wisconsin at Madison this fall, is the lead author of the paper, which appears today in the journal Current Biology. RT Pramod, an MIT postdoc, and Josh Tenenbaum, an MIT professor of brain and cognitive sciences, are also authors of the study.
Stuff vs. things
Decades of brain imaging studies, including early work by Kanwisher, have revealed regions in the brain’s ventral visual pathway that are involved in recognizing the shapes of 3D objects, including an area called the lateral occipital complex (LOC). A region in the brain’s dorsal visual pathway, known as the frontoparietal physics network (FPN), analyzes the physical properties of materials, such as mass or stability.
Although scientists have learned a great deal about how these pathways respond to different features of objects, the vast majority of these studies have been done with solid objects, or “things.”
“Nobody has asked how we perceive what we call ‘stuff’ — that is, liquids or sand, honey, water, all sorts of gooey things. And so we decided to study that,” Paulun says.
These gooey materials behave very differently from solids. They flow rather than bounce, and interacting with them usually requires containers and tools such as spoons. The researchers wondered if these physical features might require the brain to devote specialized regions to interpreting them.
To explore how the brain processes these materials, Paulun used a software program designed for visual effects artists to create more than 100 video clips showing different types of things or stuff interacting with the physical environment. In these videos, the materials could be seen sloshing or tumbling inside a transparent box, being dropped onto another object, or bouncing or flowing down a set of stairs.
The researchers used functional magnetic resonance imaging (fMRI) to scan the visual cortex of people as they watched the videos. They found that both the LOC and the FPN respond to “things” and “stuff,” but that each pathway has distinctive subregions that respond more strongly to one or the other.
“Both the ventral and the dorsal visual pathway seem to have this subdivision, with one part responding more strongly to ‘things,’ and the other responding more strongly to ‘stuff,’” Paulun says. “We haven’t seen this before because nobody has asked that before.”
Roland Fleming, a professor of experimental psychology at Justus Liebig University of Geissen, described the findings as a “major breakthrough in the scientific understanding of how our brains represent the physical properties of our surrounding world.”
“We’ve known the distinction exists for a long time psychologically, but this is the first time that it’s been really mapped onto separate cortical structures in the brain. Now we can investigate the different computations that the distinct brain regions use to process and represent objects and materials,” says Fleming, who was not involved in the study.
Physical interactions
The findings suggest that the brain may have different ways of representing these two categories of material, similar to the artificial physics engines that are used to create video game graphics. These engines usually represent a 3D object as a mesh, while fluids are represented as sets of particles that can be rearranged.
“The interesting hypothesis that we can draw from this is that maybe the brain, similar to artificial game engines, has separate computations for representing and simulating ‘stuff’ and ‘things.’ And that would be something to test in the future,” Paulun says.
The researchers also hypothesize that these regions may have developed to help the brain understand important distinctions that allow it to plan how to interact with the physical world. To further explore this possibility, the researchers plan to study whether the areas involved in processing rigid objects are also active when a brain circuit involved in planning to grasp objects is active.
They also hope to look at whether any of the areas within the FPN correlate with the processing of more specific features of materials, such as the viscosity of liquids or the bounciness of objects. And in the LOC, they plan to study how the brain represents changes in the shape of fluids and deformable substances.
The research was funded by the German Research Foundation, the U.S. National Institutes of Health, and a U.S. National Science Foundation grant to the Center for Brains, Minds, and Machines.
Mapping cells in time and space: New tool reveals a detailed history of tumor growth
All life is connected in a vast family tree. Every organism exists in relationship to its ancestors, descendants, and cousins, and the path between any two individuals can be traced. The same is true of cells within organisms — each of the trillions of cells in the human body is produced through successive divisions from a fertilized egg, and can all be related to one another through a cellular family tree. In simpler organisms, such as the worm C. elegans, this cellular family tree has been fully mapped, but the cellular family tree of a human is many times larger and more complex.
In the past, MIT professor and Whitehead Institute for Biomedical Research member Jonathan Weissman and other researchers developed lineage tracing methods to track and reconstruct the family trees of cell divisions in model organisms in order to understand more about the relationships between cells and how they assemble into tissues, organs, and — in some cases — tumors. These methods could help to answer many questions about how organisms develop and diseases like cancer are initiated and progress.
Now, Weissman and colleagues have developed an advanced lineage tracing tool that not only captures an accurate family tree of cell divisions, but also combines that with spatial information: identifying where each cell ends up within a tissue. The researchers used their tool, PEtracer, to observe the growth of metastatic tumors in mice. Combining lineage tracing and spatial data provided the researchers with a detailed view of how elements intrinsic to the cancer cells and from their environments influenced tumor growth, as Weissman and postdocs in his lab Luke Koblan, Kathryn Yost, and Pu Zheng, and graduate student William Colgan share in a paper published in the journal Science on July 24.
“Developing this tool required combining diverse skill sets through the sort of ambitious interdisciplinary collaboration that’s only possible at a place like Whitehead Institute,” says Weissman, who is also a Howard Hughes Medical Institute investigator. “Luke came in with an expertise in genetic engineering, Pu in imaging, Katie in cancer biology, and William in computation, but the real key to their success was their ability to work together to build PEtracer.”
“Understanding how cells move in time and space is an important way to look at biology, and here we were able to see both of those things in high resolution. The idea is that by understanding both a cell’s past and where it ends up, you can see how different factors throughout its life influenced its behaviors. In this study, we use these approaches to look at tumor growth, though in principle we can now begin to apply these tools to study other biology of interest, like embryonic development,” Koblan says.
Designing a tool to track cells in space and time
PEtracer tracks cells’ lineages by repeatedly adding short, predetermined codes to the DNA of cells over time. Each piece of code, called a lineage tracing mark, is made up of five bases, the building blocks of DNA. These marks are inserted using a gene editing technology called prime editing, which directly rewrites stretches of DNA with minimal undesired byproducts. Over time, each cell acquires more lineage tracing marks, while also maintaining the marks of its ancestors. The researchers can then compare cells’ combinations of marks to figure out relationships and reconstruct the family tree.
“We used computational modeling to design the tool from first principles, to make sure that it was highly accurate, and compatible with imaging technology. We ran many simulations to land on the optimal parameters for a new lineage tracing tool, and then engineered our system to fit those parameters,” Colgan says.
When the tissue — in this case, a tumor growing in the lung of a mouse — had sufficiently grown, the researchers collected these tissues and used advanced imaging approaches to look at each cell’s lineage relationship to other cells via the lineage tracing marks, along with its spatial position within the imaged tissue and its identity (as determined by the levels of different RNAs expressed in each cell). PEtracer is compatible with both imaging approaches and sequencing methods that capture genetic information from single cells.
“Making it possible to collect and analyze all of this data from the imaging was a large challenge,” Zheng says. “What’s particularly exciting to me is not just that we were able to collect terabytes of data, but that we designed the project to collect data that we knew we could use to answer important questions and drive biological discovery.”
Reconstructing the history of a tumor
Combining the lineage tracing, gene expression, and spatial data let the researchers understand how the tumor grew. They could tell how closely related neighboring cells are and compare their traits. Using this approach, the researchers found that the tumors they were analyzing were made up of four distinct modules, or neighborhoods, of cells.
The tumor cells closest to the lung, the most nutrient-dense region, were the most fit, meaning their lineage history indicated the highest rate of cell division over time. Fitness in cancer cells tends to correlate to how aggressively tumors will grow.
The cells at the “leading edge” of the tumor, the far side from the lung, were more diverse and not as fit. Below the leading edge was a low-oxygen neighborhood of cells that might once have been leading edge cells, now trapped in a less-desirable spot. Between these cells and the lung-adjacent cells was the tumor core, a region with both living and dead cells, as well as cellular debris.
The researchers found that cancer cells across the family tree were equally likely to end up in most of the regions, with the exception of the lung-adjacent region, where a few branches of the family tree dominated. This suggests that the cancer cells’ differing traits were heavily influenced by their environments, or the conditions in their local neighborhoods, rather than their family history. Further evidence of this point was that expression of certain fitness-related genes, such as Fgf1/Fgfbp1, correlated to a cell’s location, rather than its ancestry. However, lung-adjacent cells also had inherited traits that gave them an edge, including expression of the fitness-related gene Cldn4 — showing that family history influenced outcomes as well.
These findings demonstrate how cancer growth is influenced both by factors intrinsic to certain lineages of cancer cells and by environmental factors that shape the behavior of cancer cells exposed to them.
“By looking at so many dimensions of the tumor in concert, we could gain insights that would not have been possible with a more limited view,” Yost says. “Being able to characterize different populations of cells within a tumor will enable researchers to develop therapies that target the most aggressive populations more effectively.”
“Now that we’ve done the hard work of designing the tool, we’re excited to apply it to look at all sorts of questions in health and disease, in embryonic development, and across other model species, with an eye toward understanding important problems in human health,” Koblan says. “The data we collect will also be useful for training AI models of cellular behavior. We’re excited to share this technology with other researchers and see what we all can discover.”
Creeping crystals: Scientists observe “salt creep” at the single-crystal scale
Salt creeping, a phenomenon that occurs in both natural and industrial processes, describes the collection and migration of salt crystals from evaporating solutions onto surfaces. Once they start collecting, the crystals climb, spreading away from the solution. This creeping behavior, according to researchers, can cause damage or be harnessed for good, depending on the context. New research published June 30 in the journal Langmuir is the first to show salt creeping at a single-crystal scale and beneath a liquid’s meniscus.
“The work not only explains how salt creeping begins, but why it begins and when it does,” says Joseph Phelim Mooney, a postdoc in the MIT Device Research Laboratory and one of the authors of the new study. “We hope this level of insight helps others, whether they’re tackling water scarcity, preserving ancient murals, or designing longer-lasting infrastructure.”
The work is the first to directly visualize how salt crystals grow and interact with surfaces underneath a liquid meniscus, something that’s been theorized for decades but never actually imaged or confirmed at this level, and it offers fundamental insights that could impact a wide range of fields — from mineral extraction and desalination to anti-fouling coatings, membrane design for separation science, and even art conservation, where salt damage is a major threat to heritage materials.
In civil engineering applications, for example, the research can help explain why and when salt crystals start growing across surfaces like concrete, stone, or building materials. “These crystals can exert pressure and cause cracking or flaking, reducing the long-term durability of structures,” says Mooney. “By pinpointing the moment when salt begins to creep, engineers can better design protective coatings or drainage systems to prevent this form of degradation.”
For a field like art conservation, where salt can be devastating to murals, frescoes, and ancient artifacts, often forming beneath the surface before visible damage appears, the work can help identify the exact conditions that cause salt to start moving and spreading, allowing conservators to act earlier and more precisely to protect heritage objects.
The work began during Mooney’s Marie Curie Fellowship at MIT. “I was focused on improving desalination systems and quickly ran into [salt buildup as] a major roadblock,” he says. “[Salt] was everywhere, coating surfaces, clogging flow paths, and undermining the efficiency of our designs. I realized we didn’t fully understand how or why salt starts creeping across surfaces in the first place.”
That experience led Mooney to team up with colleagues to dig into the fundamentals of salt crystallization at the air–liquid–solid interface. “We wanted to zoom in, to really see the moment salt begins to move, so we turned to in situ X-ray microscopy,” he says. “What we found gave us a whole new way to think about surface fouling, material degradation, and controlled crystallization.”
The new research may, in fact, allow better control of a crystallization processes required to remove salt from water in zero-liquid discharge systems. It can also be used to explain how and when scaling happens on equipment surfaces, and may support emerging climate technologies that depend on smart control of evaporation and crystallization.
The work also supports mineral and salt extraction applications, where salt creeping can be both a bottleneck and an opportunity. In these applications, Mooney says, “by understanding the precise physics of salt formation at surfaces, operators can optimize crystal growth, improving recovery rates and reducing material losses.”
Mooney’s co-authors on the paper include fellow MIT Device Lab researchers Omer Refet Caylan, Bachir El Fil (now an associate professor at Georgia Tech), and Lenan Zhang (now an associate professor at Cornell University); Jeff Punch and Vanessa Egan of the University of Limerick; and Jintong Gao of Cornell.
The research was conducted using in situ X-ray microscopy. Mooney says the team’s big realization moment occurred when they were able to observe a single salt crystal pinning itself to the surface, which kicked off a cascading chain reaction of growth.
“People had speculated about this, but we captured it on X-ray for the first time. It felt like watching the microscopic moment where everything tips, the ignition points of a self-propagating process,” says Mooney. “Even more surprising was what followed: The salt crystal didn’t just grow passively to fill the available space. It pierced through the liquid-air interface and reshaped the meniscus itself, setting up the perfect conditions for the next crystal. That subtle, recursive mechanism had never been visually documented before — and seeing it play out in real time completely changed how we thought about salt crystallization.”
The paper, “In Situ X-ray Microscopy Unraveling the Onset of Salt Creeping at a Single-Crystal Level,” is available now in the journal Langmuir. Research was conducted in MIT.nano.
New algorithms enable efficient machine learning with symmetric data
If you rotate an image of a molecular structure, a human can tell the rotated image is still the same molecule, but a machine-learning model might think it is a new data point. In computer science parlance, the molecule is “symmetric,” meaning the fundamental structure of that molecule remains the same if it undergoes certain transformations, like rotation.
If a drug discovery model doesn’t understand symmetry, it could make inaccurate predictions about molecular properties. But despite some empirical successes, it’s been unclear whether there is a computationally efficient method to train a good model that is guaranteed to respect symmetry.
A new study by MIT researchers answers this question, and shows the first method for machine learning with symmetry that is provably efficient in terms of both the amount of computation and data needed.
These results clarify a foundational question, and they could aid researchers in the development of more powerful machine-learning models that are designed to handle symmetry. Such models would be useful in a variety of applications, from discovering new materials to identifying astronomical anomalies to unraveling complex climate patterns.
“These symmetries are important because they are some sort of information that nature is telling us about the data, and we should take it into account in our machine-learning models. We’ve now shown that it is possible to do machine-learning with symmetric data in an efficient way,” says Behrooz Tahmasebi, an MIT graduate student and co-lead author of this study.
He is joined on the paper by co-lead author and MIT graduate student Ashkan Soleymani; Stefanie Jegelka, an associate professor of electrical engineering and computer science (EECS) and a member of the Institute for Data, Systems, and Society (IDSS) and the Computer Science and Artificial Intelligence Laboratory (CSAIL); and senior author Patrick Jaillet, the Dugald C. Jackson Professor of Electrical Engineering and Computer Science and a principal investigator in the Laboratory for Information and Decision Systems (LIDS). The research was recently presented at the International Conference on Machine Learning.
Studying symmetry
Symmetric data appear in many domains, especially the natural sciences and physics. A model that recognizes symmetries is able to identify an object, like a car, no matter where that object is placed in an image, for example.
Unless a machine-learning model is designed to handle symmetry, it could be less accurate and prone to failure when faced with new symmetric data in real-world situations. On the flip side, models that take advantage of symmetry could be faster and require fewer data for training.
But training a model to process symmetric data is no easy task.
One common approach is called data augmentation, where researchers transform each symmetric data point into multiple data points to help the model generalize better to new data. For instance, one could rotate a molecular structure many times to produce new training data, but if researchers want the model to be guaranteed to respect symmetry, this can be computationally prohibitive.
An alternative approach is to encode symmetry into the model’s architecture. A well-known example of this is a graph neural network (GNN), which inherently handles symmetric data because of how it is designed.
“Graph neural networks are fast and efficient, and they take care of symmetry quite well, but nobody really knows what these models are learning or why they work. Understanding GNNs is a main motivation of our work, so we started with a theoretical evaluation of what happens when data are symmetric,” Tahmasebi says.
They explored the statistical-computational tradeoff in machine learning with symmetric data. This tradeoff means methods that require fewer data can be more computationally expensive, so researchers need to find the right balance.
Building on this theoretical evaluation, the researchers designed an efficient algorithm for machine learning with symmetric data.
Mathematical combinations
To do this, they borrowed ideas from algebra to shrink and simplify the problem. Then, they reformulated the problem using ideas from geometry that effectively capture symmetry.
Finally, they combined the algebra and the geometry into an optimization problem that can be solved efficiently, resulting in their new algorithm.
“Most of the theory and applications were focusing on either algebra or geometry. Here we just combined them,” Tahmasebi says.
The algorithm requires fewer data samples for training than classical approaches, which would improve a model’s accuracy and ability to adapt to new applications.
By proving that scientists can develop efficient algorithms for machine learning with symmetry, and demonstrating how it can be done, these results could lead to the development of new neural network architectures that could be more accurate and less resource-intensive than current models.
Scientists could also use this analysis as a starting point to examine the inner workings of GNNs, and how their operations differ from the algorithm the MIT researchers developed.
“Once we know that better, we can design more interpretable, more robust, and more efficient neural network architectures,” adds Soleymani.
This research is funded, in part, by the National Research Foundation of Singapore, DSO National Laboratories of Singapore, the U.S. Office of Naval Research, the U.S. National Science Foundation, and an Alexander von Humboldt Professorship.
“FUTURE PHASES” showcases new frontiers in music technology and interactive performance
Music technology took center stage at MIT during “FUTURE PHASES,” an evening of works for string orchestra and electronics, presented by the MIT Music Technology and Computation Graduate Program as part of the 2025 International Computer Music Conference (ICMC).
The well-attended event was held last month in the Thomas Tull Concert Hall within the new Edward and Joyce Linde Music Building. Produced in collaboration with the MIT Media Lab’s Opera of the Future Group and Boston’s self-conducted chamber orchestra A Far Cry, “FUTURE PHASES” was the first event to be presented by the MIT Music Technology and Computation Graduate Program in MIT Music’s new space.
“FUTURE PHASES” offerings included two new works by MIT composers: the world premiere of “EV6,” by MIT Music’s Kenan Sahin Distinguished Professor Evan Ziporyn and professor of the practice Eran Egozy; and the U.S. premiere of “FLOW Symphony,” by the MIT Media Lab’s Muriel R. Cooper Professor of Music and Media Tod Machover. Three additional works were selected by a jury from an open call for works: “The Wind Will Carry Us Away,” by Ali Balighi; “A Blank Page,” by Celeste Betancur Gutiérrez and Luna Valentin; and “Coastal Portrait: Cycles and Thresholds,” by Peter Lane. Each work was performed by Boston’s own multi-Grammy-nominated string orchestra, A Far Cry.
“The ICMC is all about presenting the latest research, compositions, and performances in electronic music,” says Egozy, director of the new Music Technology and Computation Graduate Program at MIT. When approached to be a part of this year’s conference, “it seemed the perfect opportunity to showcase MIT’s commitment to music technology, and in particular the exciting new areas being developed right now: a new master’s program in music technology and computation, the new Edward and Joyce Linde Music Building with its enhanced music technology facilities, and new faculty arriving at MIT with joint appointments between MIT Music and Theater Arts (MTA) and the Department of Electrical Engineering and Computer Science (EECS).” These recently hired professors include Anna Huang, a keynote speaker for the conference and creator of the machine learning model Coconet that powered Google’s first AI Doodle, the Bach Doodle.
Egozy emphasizes the uniqueness of this occasion: “You have to understand that this is a very special situation. Having a full 18-member string orchestra [A Far Cry] perform new works that include electronics does not happen very often. In most cases, ICMC performances consist either entirely of electronics and computer-generated music, or perhaps a small ensemble of two-to-four musicians. So the opportunity we could present to the larger community of music technology was particularly exciting.”
To take advantage of this exciting opportunity, an open call was put out internationally to select the other pieces that would accompany Ziporyn and Egozy’s “EV6” and Machover’s “FLOW Symphony.” Three pieces were selected from a total of 46 entries to be a part of the evening’s program by a panel of judges that included Egozy, Machover, and other distinguished composers and technologists.
“We received a huge variety of works from this call,” says Egozy. “We saw all kinds of musical styles and ways that electronics would be used. No two pieces were very similar to each other, and I think because of that, our audience got a sense of how varied and interesting a concert can be for this format. A Far Cry was really the unifying presence. They played all pieces with great passion and nuance. They have a way of really drawing audiences into the music. And, of course, with the Thomas Tull Concert Hall being in the round, the audience felt even more connected to the music.”
Egozy continues, “we took advantage of the technology built into the Thomas Tull Concert Hall, which has 24 built-in speakers for surround sound allowing us to broadcast unique, amplified sound to every seat in the house. Chances are that every person might have experienced the sound slightly differently, but there was always some sense of a multidimensional evolution of sound and music as the pieces unfolded.”
The five works of the evening employed a range of technological components that included playing synthesized, prerecorded, or electronically manipulated sounds; attaching microphones to instruments for use in real-time signal processing algorithms; broadcasting custom-generated musical notation to the musicians; utilizing generative AI to process live sound and play it back in interesting and unpredictable ways; and audience participation, where spectators use their cellphones as musical instruments to become a part of the ensemble.
Ziporyn and Egozy’s piece, “EV6,” took particular advantage of this last innovation: “Evan and I had previously collaborated on a system called Tutti, which means ‘together’ in Italian. Tutti gives an audience the ability to use their smartphones as musical instruments so that we can all play together.” Egozy developed the technology, which was first used in the MIT Campaign for a Better World in 2017. The original application involved a three-minute piece for cellphones only. “But for this concert,” Egozy explains, “Evan had the idea that we could use the same technology to write a new piece — this time, for audience phones and a live string orchestra as well.”
To explain the piece’s title, Ziporyn says, “I drive an EV6; it’s my first electric car, and when I first got it, it felt like I was driving an iPhone. But of course it’s still just a car: it’s got wheels and an engine, and it gets me from one place to another. It seemed like a good metaphor for this piece, in which a lot of the sound is literally played on cellphones, but still has to work like any other piece of music. It’s also a bit of an homage to David Bowie’s song ‘TVC 15,’ which is about falling in love with a robot.”
Egozy adds, “We wanted audience members to feel what it is like to play together in an orchestra. Through this technology, each audience member becomes a part of an orchestral section (winds, brass, strings, etc.). As they play together, they can hear their whole section playing similar music while also hearing other sections in different parts of the hall play different music. This allows an audience to feel a responsibility to their section, hear how music can move between different sections of an orchestra, and experience the thrill of live performance. In ‘EV6,’ this experience was even more electrifying because everyone in the audience got to play with a live string orchestra — perhaps for the first time in recorded history.”
After the concert, guests were treated to six music technology demonstrations that showcased the research of undergraduate and graduate students from both the MIT Music program and the MIT Media Lab. These included a gamified interface for harnessing just intonation systems (Antonis Christou); insights from a human-AI co-created concert (Lancelot Blanchard and Perry Naseck); a system for analyzing piano playing data across campus (Ayyub Abdulrezak ’24, MEng ’25); capturing music features from audio using latent frequency-masked autoencoders (Mason Wang); a device that turns any surface into a drum machine (Matthew Caren ’25); and a play-along interface for learning traditional Senegalese rhythms (Mariano Salcedo ’25). This last example led to the creation of Senegroove, a drumming-based application specifically designed for an upcoming edX online course taught by ethnomusicologist and MIT associate professor in music Patricia Tang, and world-renowned Senegalese drummer and MIT lecturer in music Lamine Touré, who provided performance videos of the foundational rhythms used in the system.
Ultimately, Egozy muses, “'FUTURE PHASES' showed how having the right space — in this case, the new Edward and Joyce Linde Music Building — really can be a driving force for new ways of thinking, new projects, and new ways of collaborating. My hope is that everyone in the MIT community, the Boston area, and beyond soon discovers what a truly amazing place and space we have built, and are still building here, for music and music technology at MIT.”
New transmitter could make wireless devices more energy-efficient
Researchers from MIT and elsewhere have designed a novel transmitter chip that significantly improves the energy efficiency of wireless communications, which could boost the range and battery life of a connected device.
Their approach employs a unique modulation scheme to encode digital data into a wireless signal, which reduces the amount of error in the transmission and leads to more reliable communications.
The compact, flexible system could be incorporated into existing internet-of-things devices to provide immediate gains, while also meeting the more stringent efficiency requirements of future 6G technologies.
The versatility of the chip could make it well-suited for a range of applications that require careful management of energy for communications, such as industrial sensors that continuously monitor factory conditions and smart appliances that provide real-time notifications.
“By thinking outside the box, we created a more efficient, intelligent circuit for next-generation devices that is also even better than the state-of-the-art for legacy architectures. This is just one example of how adopting a modular approach to allow for adaptability can drive innovation at every level,” says Muriel Médard, the School of Science NEC Professor of Software Science and Engineering, a professor in the MIT Department of Electrical Engineering and Computer Science (EECS), and co-author of a paper on the new transmitter.
Médard’s co-authors include Timur Zirtiloglu, the lead author and a graduate student at Boston University; Arman Tan, a graduate student at BU; Basak Ozaydin, an MIT graduate student in EECS; Ken Duffy, a professor at Northeastern University; and Rabia Tugce Yazicigil, associate professor of electrical and computer engineering at BU. The research was recently presented at the IEEE Radio Frequency Circuits Symposium.
Optimizing transmissions
In wireless devices, a transmitter converts digital data into an electromagnetic signal that is sent over the airwaves to a receiver. The transmitter does this by mapping digital bits to symbols that represent the amplitude and phase of the electromagnetic signal, which is a process called modulation.
Traditional systems transmit signals that are evenly spaced by creating a uniform pattern of symbols, which helps avoid interference. But this uniform structure lacks adaptability and can be inefficient, since wireless channel conditions are dynamic and often change rapidly.
As an alternative, optimal modulation schemes follow a non-uniform pattern that can adapt to changing channel conditions, maximizing the amount of data transmitted while minimizing energy usage.
But while optimal modulation can be more energy efficient, it is also more susceptible to errors, especially in crowded wireless environments. When the signals aren’t uniform in length, it can be harder for the receiver to distinguish between symbols and noise that squeezed into the transmission.
To overcome this problem, the MIT transmitter adds a small amount of padding, in the form of extra bits between symbols, so that every transmission is the same length.
This helps the receiver identify the beginning and end of each transmission, preventing misinterpretation of the message. However, the device enjoys the energy efficiency gains of using a non-uniform, optimal modulation scheme.
This approach works because of a technique the researchers previously developed known as GRAND, which is a universal decoding algorithm that crack any code by guessing the noise that affected the transmission.
Here, they employ a GRAND-inspired algorithm to adjust the length of the received transmission by guessing the extra bits that have been added. In this way, the receiver can effectively reconstruct the original message.
“Now, thanks to GRAND, we can have a transmitter that is capable of doing these more efficient transmissions with non-uniform constellations of data, and we can see the gains,” Médard says.
A flexible circuit
The new chip, which has a compact architecture that allows the researchers to integrate additional efficiency-boosting methods, enabled transmissions with only about one-quarter the amount of signal error of methods that use optimal modulation.
Surprisingly, the device also achieved significantly lower error rates than transmitters that use traditional modulation.
“The traditional approach has become so ingrained that it was challenging to not get lured back to the status quo, especially since we were changing things that we often take for granted and concepts we’ve been teaching for decades,” Médard says.
This innovative architecture could be used to improve the energy efficiency and reliability of current wireless communication devices, while also offering the flexibility to be incorporated into future devices that employ optimal modulation.
Next, the researchers want to adapt their approach to leverage additional techniques that could boost efficiency and reduce the error rates in wireless transmissions.
“This optimal modulation transmitter radio frequency integrated circuit is a game-changing innovation over the traditional RF signal modulation. It’s set to play a major role for the next generation of wireless connectivity such as 6G and Wi-Fi,” says Rocco Tam, NXP Fellow for Wireless Connectivity SoC Research and Development at NXP Semiconductors, who was not involved with this research.
This work is supported, in part, by the U.S. Defense Advanced Research Projects Agency (DARPA), the National Science Foundation (NSF), and the Texas Analog Center for Excellence.
Why animals are a critical part of forest carbon absorption
A lot of attention has been paid to how climate change can drive biodiversity loss. Now, MIT researchers have shown the reverse is also true: Reductions in biodiversity can jeopardize one of Earth’s most powerful levers for mitigating climate change.
In a paper published in PNAS, the researchers showed that following deforestation, naturally-regrowing tropical forests, with healthy populations of seed-dispersing animals, can absorb up to four times more carbon than similar forests with fewer seed-dispersing animals.
Because tropical forests are currently Earth’s largest land-based carbon sink, the findings improve our understanding of a potent tool to fight climate change.
“The results underscore the importance of animals in maintaining healthy, carbon-rich tropical forests,” says Evan Fricke, a research scientist in the MIT Department of Civil and Environmental Engineering and the lead author of the new study. “When seed-dispersing animals decline, we risk weakening the climate-mitigating power of tropical forests.”
Fricke’s co-authors on the paper include César Terrer, the Tianfu Career Development Associate Professor at MIT; Charles Harvey, an MIT professor of civil and environmental engineering; and Susan Cook-Patton of The Nature Conservancy.
The study combines a wide array of data on animal biodiversity, movement, and seed dispersal across thousands of animal species, along with carbon accumulation data from thousands of tropical forest sites.
The researchers say the results are the clearest evidence yet that seed-dispersing animals play an important role in forests’ ability to absorb carbon, and that the findings underscore the need to address biodiversity loss and climate change as connected parts of a delicate ecosystem rather as separate problems in isolation.
“It’s been clear that climate change threatens biodiversity, and now this study shows how biodiversity losses can exacerbate climate change,” Fricke says. “Understanding that two-way street helps us understand the connections between these challenges, and how we can address them. These are challenges we need to tackle in tandem, and the contribution of animals to tropical forest carbon shows that there are win-wins possible when supporting biodiversity and fighting climate change at the same time.”
Putting the pieces together
The next time you see a video of a monkey or bird enjoying a piece of fruit, consider that the animals are actually playing an important role in their ecosystems. Research has shown that by digesting the seeds and defecating somewhere else, animals can help with the germination, growth, and long-term survival of the plant.
Fricke has been studying animals that disperse seeds for nearly 15 years. His previous research has shown that without animal seed dispersal, trees have lower survival rates and a harder time keeping up with environmental changes.
“We’re now thinking more about the roles that animals might play in affecting the climate through seed dispersal,” Fricke says. “We know that in tropical forests, where more than three-quarters of trees rely on animals for seed dispersal, the decline of seed dispersal could affect not just the biodiversity of forests, but how they bounce back from deforestation. We also know that all around the world, animal populations are declining.”
Regrowing forests is an often-cited way to mitigate the effects of climate change, but the influence of biodiversity on forests’ ability to absorb carbon has not been fully quantified, especially at larger scales.
For their study, the researchers combined data from thousands of separate studies and used new tools for quantifying disparate but interconnected ecological processes. After analyzing data from more than 17,000 vegetation plots, the researchers decided to focus on tropical regions, looking at data on where seed-dispersing animals live, how many seeds each animal disperses, and how they affect germination.
The researchers then incorporated data showing how human activity impacts different seed-dispersing animals’ presence and movement. They found, for example, that animals move less when they consume seeds in areas with a bigger human footprint.
Combining all that data, the researchers created an index of seed-dispersal disruption that revealed a link between human activities and declines in animal seed dispersal. They then analyzed the relationship between that index and records of carbon accumulation in naturally regrowing tropical forests over time, controlling for factors like drought conditions, the prevalence of fires, and the presence of grazing livestock.
“It was a big task to bring data from thousands of field studies together into a map of the disruption of seed dispersal,” Fricke says. “But it lets us go beyond just asking what animals are there to actually quantifying the ecological roles those animals are playing and understanding how human pressures affect them.”
The researchers acknowledged that the quality of animal biodiversity data could be improved and introduces uncertainty into their findings. They also note that other processes, such as pollination, seed predation, and competition influence seed dispersal and can constrain forest regrowth. Still, the findings were in line with recent estimates.
“What’s particularly new about this study is we’re actually getting the numbers around these effects,” Fricke says. “Finding that seed dispersal disruption explains a fourfold difference in carbon absorption across the thousands of tropical regrowth sites included in the study points to seed dispersers as a major lever on tropical forest carbon.”
Quantifying lost carbon
In forests identified as potential regrowth sites, the researchers found seed-dispersal declines were linked to reductions in carbon absorption each year averaging 1.8 metric tons per hectare, equal to a reduction in regrowth of 57 percent.
The researchers say the results show natural regrowth projects will be more impactful in landscapes where seed-dispersing animals have been less disrupted, including areas that were recently deforested, are near high-integrity forests, or have higher tree cover.
“In the discussion around planting trees versus allowing trees to regrow naturally, regrowth is basically free, whereas planting trees costs money, and it also leads to less diverse forests,” Terrer says. “With these results, now we can understand where natural regrowth can happen effectively because there are animals planting the seeds for free, and we also can identify areas where, because animals are affected, natural regrowth is not going to happen, and therefore planting trees actively is necessary.”
To support seed-dispersing animals, the researchers encourage interventions that protect or improve their habitats and that reduce pressures on species, ranging from wildlife corridors to restrictions on wildlife trade. Restoring the ecological roles of seed dispersers is also possible by reintroducing seed-dispersing species where they’ve been lost or planting certain trees that attract those animals.
The findings could also make modeling the climate impact of naturally regrowing forests more accurate.
“Overlooking the impact of seed-dispersal disruption may overestimate natural regrowth potential in many areas and underestimate it in others,” the authors write.
The researchers believe the findings open up new avenues of inquiry for the field.
“Forests provide a huge climate subsidy by sequestering about a third of all human carbon emissions,” Terrer says. “Tropical forests are by far the most important carbon sink globally, but in the last few decades, their ability to sequester carbon has been declining. We will next explore how much of that decline is due to an increase in extreme droughts or fires versus declines in animal seed dispersal.”
Overall, the researchers hope the study helps improves our understanding of the planet’s complex ecological processes.
“When we lose our animals, we’re losing the ecological infrastructure that keeps our tropical forests healthy and resilient,” Fricke says.
The research was supported by the MIT Climate and Sustainability Consortium, the Government of Portugal, and the Bezos Earth Fund.
Staff members honored with 2025 Excellence Awards, Collier Medal, and Staff Award for Distinction in Service
On Thursday, June 5, 11 individuals and four teams were awarded MIT Excellence Awards — the highest awards for staff at the Institute. Cheers from colleagues holding brightly colored signs and pompoms rang out in Kresge Auditorium in celebration of the honorees. In addition to the Excellence Awards, staff members received the Collier Medal, the Staff Award for Distinction in Service, and the Gordon Y. Billard Award.
The Collier Medal honors the memory of Officer Sean Collier, who gave his life protecting and serving MIT. The medal recognizes an individual or group whose actions demonstrate the importance of community, and whose contributions exceed the boundaries of their profession. The Staff Award for Distinction in Service is presented to an individual whose service results in a positive, lasting impact on the MIT community. The Gordon Y. Billard Award is given to staff or faculty members, or MIT-affiliated individuals, who provide "special service of outstanding merit performed for the Institute."
The 2025 MIT Excellence Award recipients and their award categories are:
Bringing Out the Best
- Timothy Collard
- Whitney Cornforth
- Roger Khazan
Embracing Inclusion
- Denise Phillips
Innovative Solutions
- Ari Jacobovits
- Stephanie Tran
- MIT Health Rebranding Team, Office of the Executive Vice President and Treasurer: Ann Adelsberger, Amy Ciarametaro, Kimberly Schive, Emily Wade
Outstanding Contributor
- Sharon Clarke
- Charles "Chip" Coldwell
- Jeremy Mineweaser
- Christopher "Petey" Peterson
- MIT Health Accreditation Team, Office of the Executive Vice President and Treasurer: Christianne Garcia, David Podradchik, Janis Puibello, Kristen Raymond
- MIT Museum Visitor Experience Supervisor Team, Associate Provost for the Arts: Mariah Crowley, Brianna Vega
Serving Our Community
- Nada Miqdadi El-Alami
- MIT International Scholars Office, Office of the Vice President for Research: Portia Brummitt-Vachon, Amanda Doran, Brianna L. Drakos, Fumiko Futai, Bay Heidrich, Benjamin Hull, Penny Rosser, Henry Rotchford, Patricia Toledo, Makiko Wada
- Building 68 Kitchen Staff, Department of Biology, School of Science: Brikti Abera, AnnMarie Budhai, Nicholas Budhai, Daniel Honiker, Janet Katin, Umme Khan, Shuming Lin, Kelly McKinnon, Karen O'Leary
The 2025 Collier Medal recipient was Kathleen Monagle, associate dean and director of disability and access services, student support, and wellbeing in the Division of Student Life. Monagle oversees a team that supports almost 600 undergraduate, graduate, and MITx students with more than 4,000 accommodations. She works with faculty to ensure those students have the best possible learning experience — both in MIT’s classrooms and online.
This year’s recipient of the 2025 Staff Award for Distinction in Service was Stu Schmill, dean of admissions and student financial services in the Office of the Vice Chancellor. Schmill graduated from MIT in 1986 and has since served the Institute in a variety of roles. His colleagues admire his passion for sharing knowledge; his insight and integrity; and his deep love for MIT’s culture, values, and people.
Three community members were honored with a 2025 Gordon Y. Billard Award.
William "Bill" Cormier, project technician, Department of Mechanical Engineering, School of Engineering
John E. Fernández, professor, Department of Architecture, School of Architecture and Planning; and director of MIT Environmental Solutions Initiative, Office of the Vice President for Research
Tony Lee, coach, MIT Women's Volleyball Club, Student Organizations, Leadership, and Engagement, Division of Student Life
Presenters included President Sally Kornbluth; MIT Chief of Police John DiFava and Deputy Chief Steven DeMarco; Dean of the School of Science Nergis Mavalvala; Vice President for Human Resources Ramona Allen; Executive Vice President and Treasurer Glen Shor; Lincoln Laboratory Assistant Director Justin Brooke; Chancellor Melissa Nobles; and Provost Anantha Chandrakasan.
Visit the MIT Human Resources website for more information about the award recipients, categories, and to view photos and video of the event.
New system dramatically speeds the search for polymer materials
Scientists often seek new materials derived from polymers. Rather than starting a polymer search from scratch, they save time and money by blending existing polymers to achieve desired properties.
But identifying the best blend is a thorny problem. Not only is there a practically limitless number of potential combinations, but polymers interact in complex ways, so the properties of a new blend are challenging to predict.
To accelerate the discovery of new materials, MIT researchers developed a fully autonomous experimental platform that can efficiently identify optimal polymer blends.
The closed-loop workflow uses a powerful algorithm to explore a wide range of potential polymer blends, feeding a selection of combinations to a robotic system that mixes chemicals and tests each blend.
Based on the results, the algorithm decides which experiments to conduct next, continuing the process until the new polymer meets the user’s goals.
During experiments, the system autonomously identified hundreds of blends that outperformed their constituent polymers. Interestingly, the researchers found that the best-performing blends did not necessarily use the best individual components.
“I found that to be good confirmation of the value of using an optimization algorithm that considers the full design space at the same time,” says Connor Coley, the Class of 1957 Career Development Assistant Professor in the MIT departments of Chemical Engineering and Electrical Engineering and Computer Science, and senior author of a paper on this new approach. “If you consider the full formulation space, you can potentially find new or better properties. Using a different approach, you could easily overlook the underperforming components that happen to be the important parts of the best blend.”
This workflow could someday facilitate the discovery of polymer blend materials that lead to advancements like improved battery electrolytes, more cost-effective solar panels, or tailored nanoparticles for safer drug delivery.
Coley is joined on the paper by lead author Guangqi Wu, a former MIT postdoc who is now a Marie Skłodowska-Curie Postdoctoral Fellow at Oxford University; Tianyi Jin, an MIT graduate student; and Alfredo Alexander-Katz, the Michael and Sonja Koerner Professor in the MIT Department of Materials Science and Engineering. The work appears today in Matter.
Building better blends
When scientists design new polymer blends, they are faced with a nearly endless number of possible polymers to start with. Once they select a few to mix, they still must choose the composition of each polymer and the concentration of polymers in the blend.
“Having that large of a design space necessitates algorithmic solutions and higher-throughput workflows because you simply couldn’t test all the combinations using brute force,” Coley adds.
While researchers have studied autonomous workflows for single polymers, less work has focused on polymer blends because of the dramatically larger design space.
In this study, the MIT researchers sought new random heteropolymer blends, made by mixing two or more polymers with different structural features. These versatile polymers have shown particularly promising relevance to high-temperature enzymatic catalysis, a process that increases the rate of chemical reactions.
Their closed-loop workflow begins with an algorithm that, based on the user’s desired properties, autonomously identifies a handful of promising polymer blends.
The researchers originally tried a machine-learning model to predict the performance of new blends, but it was difficult to make accurate predictions across the astronomically large space of possibilities. Instead, they utilized a genetic algorithm, which uses biologically inspired operations like selection and mutation to find an optimal solution.
Their system encodes the composition of a polymer blend into what is effectively a digital chromosome, which the genetic algorithm iteratively improves to identify the most promising combinations.
“This algorithm is not new, but we had to modify the algorithm to fit into our system. For instance, we had to limit the number of polymers that could be in one material to make discovery more efficient,” Wu adds.
In addition, because the search space is so large, they tuned the algorithm to balance its choice of exploration (searching for random polymers) versus exploitation (optimizing the best polymers from the last experiment).
The algorithm sends 96 polymer blends at a time to the autonomous robotic platform, which mixes the chemicals and measures the properties of each.
The experiments were focused on improving the thermal stability of enzymes by optimizing the retained enzymatic activity (REA), a measure of how stable an enzyme is after mixing with the polymer blends and being exposed to high temperatures.
These results are sent back to the algorithm, which uses them to generate a new set of polymers until the system finds the optimal blend.
Accelerating discovery
Building the robotic system involved numerous challenges, such as developing a technique to evenly heat polymers and optimizing the speed at which the pipette tip moves up and down.
“In autonomous discovery platforms, we emphasize algorithmic innovations, but there are many detailed and subtle aspects of the procedure you have to validate before you can trust the information coming out of it,” Coley says.
When tested, the optimal blends their system identified often outperformed the polymers that formed them. The best overall blend performed 18 percent better than any of its individual components, achieving an REA of 73 percent.
“This indicates that, instead of developing new polymers, we could sometimes blend existing polymers to design new materials that perform even better than individual polymers do,” Wu says.
Moreover, their autonomous platform can generate and test 700 new polymer blends per day and only requires human intervention for refilling and replacing chemicals.
While this research focused on polymers for protein stabilization, their platform could be modified for other uses, like the development or new plastics or battery electrolytes.
In addition to exploring additional polymer properties, the researchers want to use experimental data to improve the efficiency of their algorithm and develop new algorithms to streamline the operations of the autonomous liquid handler.
“Technologically, there are urgent needs to enhance thermal stability of proteins and enzymes. The results demonstrated here are quite impressive. Being a platform technology and given the rapid advancement in machine learning and AI for material science, one can envision the possibility for this team to further enhance random heteropolymer performances or to optimize design based on end needs and usages,” says Ting Xu, an associate professor at the University of California at Berkeley, who was not involved with this work.
This work is funded, in part, by the U.S. Department of Energy, the National Science Foundation, and the Class of 1947 Career Development Chair.
Famous double-slit experiment holds up when stripped to its quantum essentials
MIT physicists have performed an idealized version of one of the most famous experiments in quantum physics. Their findings demonstrate, with atomic-level precision, the dual yet evasive nature of light. They also happen to confirm that Albert Einstein was wrong about this particular quantum scenario.
The experiment in question is the double-slit experiment, which was first performed in 1801 by the British scholar Thomas Young to show how light behaves as a wave. Today, with the formulation of quantum mechanics, the double-slit experiment is now known for its surprisingly simple demonstration of a head-scratching reality: that light exists as both a particle and a wave. Stranger still, this duality cannot be simultaneously observed. Seeing light in the form of particles instantly obscures its wave-like nature, and vice versa.
The original experiment involved shining a beam of light through two parallel slits in a screen and observing the pattern that formed on a second, faraway screen. One might expect to see two overlapping spots of light, which would imply that light exists as particles, a.k.a. photons, like paintballs that follow a direct path. But instead, the light produces alternating bright and dark stripes on the screen, in an interference pattern similar to what happens when two ripples in a pond meet. This suggests light behaves as a wave. Even weirder, when one tries to measure which slit the light is traveling through, the light suddenly behaves as particles and the interference pattern disappears.
The double-slit experiment is taught today in most high school physics classes as a simple way to illustrate the fundamental principle of quantum mechanics: that all physical objects, including light, are simultaneously particles and waves.
Nearly a century ago, the experiment was at the center of a friendly debate between physicists Albert Einstein and Niels Bohr. In 1927, Einstein argued that a photon particle should pass through just one of the two slits and in the process generate a slight force on that slit, like a bird rustling a leaf as it flies by. He proposed that one could detect such a force while also observing an interference pattern, thereby catching light’s particle and wave nature at the same time. In response, Bohr applied the quantum mechanical uncertainty principle and showed that the detection of the photon’s path would wash out the interference pattern.
Scientists have since carried out multiple versions of the double-slit experiment, and they have all, to various degrees, confirmed the validity of the quantum theory formulated by Bohr. Now, MIT physicists have performed the most “idealized” version of the double-slit experiment to date. Their version strips down the experiment to its quantum essentials. They used individual atoms as slits, and used weak beams of light so that each atom scattered at most one photon. By preparing the atoms in different quantum states, they were able to modify what information the atoms obtained about the path of the photons. The researchers thus confirmed the predictions of quantum theory: The more information was obtained about the path (i.e. the particle nature) of light, the lower the visibility of the interference pattern was.
They demonstrated what Einstein got wrong. Whenever an atom is “rustled” by a passing photon, the wave interference is diminished.
“Einstein and Bohr would have never thought that this is possible, to perform such an experiment with single atoms and single photons,” says Wolfgang Ketterle, the John D. MacArthur Professor of Physics and leader of the MIT team. “What we have done is an idealized Gedanken experiment.”
Their results appear in the journal Physical Review Letters. Ketterle’s MIT co-authors include first author Vitaly Fedoseev, Hanzhen Lin, Yu-Kun Lu, Yoo Kyung Lee, and Jiahao Lyu, who all are affiliated with MIT’s Department of Physics, the Research Laboratory of Electronics, and the MIT-Harvard Center for Ultracold Atoms.
Cold confinement
Ketterle’s group at MIT experiments with atoms and molecules that they super-cool to temperatures just above absolute zero and arrange in configurations that they confine with laser light. Within these ultracold, carefully tuned clouds, exotic phenomena that only occur at the quantum, single-atom scale can emerge.
In a recent experiment, the team was investigating a seemingly unrelated question, studying how light scattering can reveal the properties of materials built from ultracold atoms.
“We realized we can quantify the degree to which this scattering process is like a particle or a wave, and we quickly realized we can apply this new method to realize this famous experiment in a very idealized way,” Fedoseev says.
In their new study, the team worked with more than 10,000 atoms, which they cooled to microkelvin temperatures. They used an array of laser beams to arrange the frozen atoms into an evenly spaced, crystal-like lattice configuration. In this arrangement, each atom is far enough away from any other atom that each can effectively be considered a single, isolated and identical atom. And 10,000 such atoms can produce a signal that is more easily detected, compared to a single atom or two.
The group reasoned that with this arrangement, they might shine a weak beam of light through the atoms and observe how a single photon scatters off two adjacent atoms, as a wave or a particle. This would be similar to how, in the original double-slit experiment, light passes through two slits.
“What we have done can be regarded as a new variant to the double-slit experiment,” Ketterle says. “These single atoms are like the smallest slits you could possibly build.”
Tuning fuzz
Working at the level of single photons required repeating the experiment many times and using an ultrasensitive detector to record the pattern of light scattered off the atoms. From the intensity of the detected light, the researchers could directly infer whether the light behaved as a particle or a wave.
They were particularly interested in the situation where half the photons they sent in behaved as waves, and half behaved as particles. They achieved this by using a method to tune the probability that a photon will appear as a wave versus a particle, by adjusting an atom’s “fuzziness,” or the certainty of its location. In their experiment, each of the 10,000 atoms is held in place by laser light that can be adjusted to tighten or loosen the light’s hold. The more loosely an atom is held, the fuzzier, or more “spatially extensive,” it appears. The fuzzier atom rustles more easily and records the path of the photon. Therefore, in tuning up an atom’s fuzziness, researchers can increase the probability that a photon will exhibit particle-like behavior. Their observations were in full agreement with the theoretical description.
Springs away
In their experiment, the group tested Einstein’s idea about how to detect the path of the photon. Conceptually, if each slit were cut into an extremely thin sheet of paper that was suspended in the air by a spring, a photon passing through one slit should shake the corresponding spring by a certain degree that would be a signal of the photon’s particle nature. In previous realizations of the double slit experiment, physicists have incorporated such a spring-like ingredient, and the spring played a major role in describing the photon’s dual nature.
But Ketterle and his colleagues were able to perform the experiment without the proverbial springs. The team’s cloud of atoms is initially held in place by laser light, similar to Einstein’s conception of a slit suspended by a spring. The researchers reasoned that if they were to do away with their “spring,” and observe exactly the same phenomenon, then it would show that the spring has no effect on a photon’s wave/particle duality.
This, too, was what they found. Over multiple runs, they turned off the spring-like laser holding the atoms in place and then quickly took a measurement in a millionth of a second, before the atoms became more fuzzy and eventually fell down due to gravity. In this tiny amount of time, the atoms were effectively floating in free space. In this spring-free scenario, the team observed the same phenomenon: A photon’s wave and particle nature could not be observed simultaneously.
“In many descriptions, the springs play a major role. But we show, no, the springs do not matter here; what matters is only the fuzziness of the atoms,” Fedoseev says. “Therefore, one has to use a more profound description, which uses quantum correlations between photons and atoms.”
The researchers note that the year 2025 has been declared by the United Nations as the International Year of Quantum Science and Technology, celebrating the formulation of quantum mechanics 100 years ago. The discussion between Bohr and Einstein about the double-slit experiment took place only two years later.
“It’s a wonderful coincidence that we could help clarify this historic controversy in the same year we celebrate quantum physics,” says co-author Lee.
This work was supported, in part, by the National Science Foundation, the U.S. Department of Defense, and the Gordon and Betty Moore Foundation.
InvenTeams turns students into inventors
In 2023, students from Calistoga Junior/Senior High School in California entered a year-long invention project run by the Lemelson-MIT Program. Tasked with finding problems to solve in their community, the students settled on an invention to keep firefighters and agricultural workers cool in hot working conditions.
Over the next 12 months, the students learned more about the problem from the workers, developed a prototype cooling system, and filed a patent for their invention. After presenting their solution at the program’s capstone Eurekafest event at MIT, the students were invited to the California State Capitol to share their work with lawmakers, and they went on to be selected as finalists in the student SXSW Innovation Awards.
For 20 years, the Lemelson-MIT InvenTeams Grant Initiative has inspired high school students across the country by supporting them through an extracurricular invention program that culminates in presentations on MIT’s campus each spring. The students select their own problems and invent their own solutions, receiving $7,500 in grants from Lemelson-MIT, along with mentorship, technical consultation, and more support to turn their ideas into reality.
In total, high school InvenTeams have been granted 19 U.S. patents since the program’s start, with many more teams, like the one from Calistoga, continuing work on their inventions after the program. Students often report an increased sense of confidence and interest in STEM subjects following their InvenTeams experience. In some cases, that new mindset changes students’ life trajectories.
“In a traditional school setting, students don’t always get the chance to show what they can do,” says Calistoga High School teacher Heather Brooks, who sponsored the 2023 team. “I was blown away by the students’ power and creativity.”
Turning students into inventors
The Lemelson Prize program started in 2004 with one $500,000 award given to a prolific inventor each year and smaller prizes given to inventor teams from MIT. In 2006, following a National Science Foundation report on the best ways to foster and support inventors, the program started awarding smaller grants to teams of high school students across the country.
“[Program founder] Jerome Lemelson wanted to inspire young people to become inventors and had a deep belief that America’s strength and innovation was driven by invention,” says Lemelson-MIT Executive Director Stephanie Couch. “He wanted young people to celebrate inventors like they celebrate rock stars and football players.”
When Couch arrived at MIT nine years ago, her research showed that giving small grants to younger students was the most successful way to increase students’ interest in STEM subjects.
Each year, the InvenTeams program receives between 50 and 80 applications from student teams across the country. From there, 20 to 30 teams are selected for Excite Awards. Those teams submit an in-depth application in which they describe the problem they’re solving, conduct patent research, and share early ideas for their solution. They also outline plans for community engagement, budget allocation, and additional background research.
Judges with a range of expertise select the finalists, who submit monthly updates throughout the year. Teams also meet with the community members they are inventing solutions for regularly.
“We see invention as a practice in empathy,” says Edwin Marrero, the interim invention education manager of the Lemelson-MIT program. “When you’re inventing, you’re inventing for somebody — and we like to say you’re inventing with somebody. Students learn to communicate and work in their communities. It’s a good skill to learn early in life.”
The final event at MIT, dubbed Eurekafest, is held every June. It features live presentations at the Stata Center that are open to the public and allow the students to showcase their inventions. Students stay in MIT dormitories for a few days leading up to the presentations and participate in a series of networking opportunities.
“The presentations are my favorite part, because people are peppering students with questions, and their depth of understanding, along with the confidence they project, is totally unlike anything you’ve ever seen from a high schooler,” Couch says.
This year’s teams presented ways to detect contamination in drinking water, help visually impaired people communicate, treat groundwater for use in agriculture, and more. Finalist teams hailed from Lubbock, Texas; Edison, New Jersey; Nitro, West Virginia, and — for the first time in the program’s history — MIT’s backyard of Cambridge, Massachusetts. The team from Cambridge invented a communication device for rowers on crew teams so they can hear from their coaches. They filed a patent for their invention.
“We’ve learned from our research that this one-year program really does transform the students’ perceptions of themselves, what they’re capable of, and what they’ll do next,” Couch says. “Also, by letting them pick what problem they want to solve and for whom they want to solve it, we’re giving them agency and tapping into that intrinsic motivation in life — to find meaning and purpose. How often in school do you get to find a problem versus being told which one to work on?”
Scaling invention education
There are many stories about the impact of the InvenTeam program on students. In 2016, a team of students on the autism spectrum developed a treadmill device and app to detect lameness in cows on dairy farms — a way to catch injury or disease in the animals. The students filed a patent for the device, which cost far less than other solutions on the market.
In 2018, a team from Garey High School in California developed a sensor device to help monitor foot health in diabetic patients and prevent amputations.
“Our school is one of the lowest-performing academically, and 99 percent of our students are low income,” says Antonio Gamboa, the school district’s former science department chair. “Before the Lemelson-MIT InvenTeams grant, district administrators said they didn’t have money to support science. Once they saw what these students could do, that turned around — not just in our school, but across the district.”
The InvenTeams program has been so successful the Lemelson-MIT program created a membership program, called Partners in Invention Education, to help many more schools adopt invention education. The curriculum stretches from kindergarten all the way to the first two years of college.
“As a middle school math teacher in New York City Public Schools, I noticed kids are falling out of love with these STEM subjects at an early age,” Marrero says. “I think a big reason for that is it’s not taught in a way that meaningful to them. There often aren’t real-world applications in lessons. Lemelson-MIT’s invention education makes STEM subjects relevant to kids. They’re the drivers of the learning. They might discover they need math or science skills to solve the problem they’re working on, and it creates a different level of motivation.”
3 Questions: Applying lessons in data, economics, and policy design to the real world
Gevorg Minasyan MAP ’23 first discovered the MITx MicroMasters Program in Data, Economics, and Design of Policy (DEDP) — jointly led by the Abdul Latif Jameel Poverty Action Lab (J-PAL) and MIT Open Learning — when he was looking to better understand the process of building effective, evidence-based policies while working at the Central Bank of Armenia. After completing the MicroMasters program, Minasyan was inspired to pursue MIT’s Master’s in Data, Economics, and Design of Policy program.
Today, Minasyan is the director of the Research and Training Center at the Central Bank of Armenia. He has not only been able to apply what he has learned at MIT to his work, but he has also sought to institutionalize a culture of evidence-based policymaking at the bank and more broadly in Armenia. He spoke with MIT Open Learning about his journey through the DEDP programs, key takeaways, and how what he learned at MIT continues to guide his work.
Q: What initially drew you to the DEDP MicroMasters, and what were some highlights of the program?
A: Working at the Central Bank of Armenia, I was constantly asking myself: Can we build a system in which public policy decisions are grounded in rigorous evidence? Too often, I observed public programs that were well-intentioned and seemed to address pressing challenges, but ultimately failed to bring tangible change. Sometimes it was due to flawed design; other times, the goals simply didn’t align with what the public actually needed or expected. These experiences left a deep impression on me and sparked a strong desire to better understand what works, what doesn’t, and why.
That search led me to the DEDP MicroMasters program, which turned out to be a pivotal step in my professional journey. From the very first course, I realized that this was not just another academic program — it was a completely new way of thinking about development policy. The courses combined rigorous training in economics, data analysis, and impact evaluation with a strong emphasis on practical application. We weren’t just learning formulas or running regressions — we were being trained to ask the right questions, to think critically about causality, and to understand the trade-offs of policy choices.
Another aspect that set the MicroMasters apart was its blended structure. I was able to pursue a globally top-tier education while continuing my full-time responsibilities at the Central Bank. This made the learning deeply relevant and immediately applicable. Even as I was studying, I found myself incorporating insights from class into my day-to-day policy work, whether it was refining how we evaluated financial inclusion programs or rethinking the way we analyzed administrative data.
At the same time, the global nature of the program created a vibrant, diverse community. I engaged with students and professionals from dozens of countries, each bringing different perspectives. These interactions enriched the coursework and helped me to realize that despite the differences in context, the challenges of effective policy design — and the power of evidence to improve lives — were remarkably universal. It was a rare combination: intellectually rigorous, practically grounded, globally connected, and personally transformative.
Q: Can you describe your experiences in the Master’s in Data, Economics, and Design of Policy residential program?
A: The MicroMasters experience inspired me to go further, and I decided to apply for the full-time, residential master’s at MIT. That year was nothing short of transformative. It not only sharpened my technical and analytical skills, but also fundamentally changed the way I think about policymaking.
One of the most influential courses I took during the master’s program was 14.760 (Firms, Markets, Trade, and Growth). The analytical tools it provided mapped directly onto the systemic challenges I saw among Armenian firms. Motivated by this connection, I developed a similar course, which I now teach at the American University of Armenia. Each year, I work with students to investigate the everyday constraints that hinder firm performance, with the ultimate goal of producing data-driven research that could inform business strategy in Armenia.
The residential master’s program taught me that evidence-based decision-making starts with a mindset shift. It’s not just about applying tools, it’s about being open to questioning assumptions, being transparent about uncertainty, and being humble enough to let data challenge intuition. I also came to appreciate that truly effective policy design isn’t about finding one-off solutions, but about creating dynamic feedback loops that allow us to continuously learn from implementation.
This is essential to refining programs in real time, adapting to new information, and avoiding the trap of static, one-size-fits-all approaches. Equally valuable was becoming part of the MIT and J-PAL’s global network. The relationships I built with researchers, practitioners, and fellow students from around the world gave me lasting insights into how institutions can systematically embed analysis in their core operations. This exposure helped me to see the possibilities not just for my own work, but for how public institutions like central banks can lead the way in advancing an evidence-based culture.
Q: How are you applying what you’ve learned in the DEDP programs to the Central Bank of Armenia?
A: As director of the Research and Training Center at the Central Bank of Armenia, I have taken on a new kind of responsibility: leading the effort to scale evidence-based decision-making not only within the Central Bank, but across a broader ecosystem of public institutions in Armenia. This means building internal capacity, rethinking how research informs policy, and fostering partnerships that promote a culture of data-driven decision-making.
Beyond the classroom, the skills I developed through the DEDP program have been critical to my role in shaping real-world policy in Armenia. A particularly timely example is our national push toward a cashless economy — one of the most prominent and complex reform agendas today. In recent years, the government has rolled out a suite of bold policies aimed at boosting the adoption of non-cash payments, all part of a larger vision to modernize the financial system, reduce the shadow economy, and increase transparency. Key initiatives include a cashback program designed to encourage pensioners to use digital payments and the mandatory installation of non-cash payment terminals across businesses nationwide. In my role on an inter-agency policy team, I rely heavily on the analytical tools from DEDP to evaluate these policies and propose regulatory adjustments to ensure the transition is not only effective, but also inclusive and sustainable.
The Central Bank of Armenia recently collaborated with J-PAL Europe to co-design and host a policy design and evaluation workshop. The workshop brought together policymakers, central bankers, and analysts from various sectors and focused on integrating evidence throughout the policy cycle, from defining the problem to designing interventions and conducting rigorous evaluations. It’s just the beginning, but it already reflects how the ideas, tools, and values I absorbed at MIT are now taking institutional form back home.
Our ultimate goal is to institutionalize the use of policy evaluation as a standard practice — not as an occasional activity, but as a core part of how we govern. We’re working to embed a stronger feedback culture in policymaking, one that prioritizes learning before scaling. More experimentation, piloting, and iteration are essential before committing to large-scale rollouts of public programs. This shift requires patience and persistence, but it is critical if we want policies that are not only well-designed, but also effective, inclusive, and responsive to people’s needs.
Looking ahead, I remain committed to advancing this transformation, by building the systems, skills, and partnerships that can sustain evidence-based policymaking in Armenia for the long term.
Robot, know thyself: New vision-based system teaches machines to understand their bodies
In an office at MIT’s Computer Science and Artificial Intelligence Laboratory (CSAIL), a soft robotic hand carefully curls its fingers to grasp a small object. The intriguing part isn’t the mechanical design or embedded sensors — in fact, the hand contains none. Instead, the entire system relies on a single camera that watches the robot’s movements and uses that visual data to control it.
This capability comes from a new system CSAIL scientists developed, offering a different perspective on robotic control. Rather than using hand-designed models or complex sensor arrays, it allows robots to learn how their bodies respond to control commands, solely through vision. The approach, called Neural Jacobian Fields (NJF), gives robots a kind of bodily self-awareness. An open-access paper about the work was published in Nature on June 25.
“This work points to a shift from programming robots to teaching robots,” says Sizhe Lester Li, MIT PhD student in electrical engineering and computer science, CSAIL affiliate, and lead researcher on the work. “Today, many robotics tasks require extensive engineering and coding. In the future, we envision showing a robot what to do, and letting it learn how to achieve the goal autonomously.”
The motivation stems from a simple but powerful reframing: The main barrier to affordable, flexible robotics isn't hardware — it’s control of capability, which could be achieved in multiple ways. Traditional robots are built to be rigid and sensor-rich, making it easier to construct a digital twin, a precise mathematical replica used for control. But when a robot is soft, deformable, or irregularly shaped, those assumptions fall apart. Rather than forcing robots to match our models, NJF flips the script — giving robots the ability to learn their own internal model from observation.
Look and learn
This decoupling of modeling and hardware design could significantly expand the design space for robotics. In soft and bio-inspired robots, designers often embed sensors or reinforce parts of the structure just to make modeling feasible. NJF lifts that constraint. The system doesn’t need onboard sensors or design tweaks to make control possible. Designers are freer to explore unconventional, unconstrained morphologies without worrying about whether they’ll be able to model or control them later.
“Think about how you learn to control your fingers: you wiggle, you observe, you adapt,” says Li. “That’s what our system does. It experiments with random actions and figures out which controls move which parts of the robot.”
The system has proven robust across a range of robot types. The team tested NJF on a pneumatic soft robotic hand capable of pinching and grasping, a rigid Allegro hand, a 3D-printed robotic arm, and even a rotating platform with no embedded sensors. In every case, the system learned both the robot’s shape and how it responded to control signals, just from vision and random motion.
The researchers see potential far beyond the lab. Robots equipped with NJF could one day perform agricultural tasks with centimeter-level localization accuracy, operate on construction sites without elaborate sensor arrays, or navigate dynamic environments where traditional methods break down.
At the core of NJF is a neural network that captures two intertwined aspects of a robot’s embodiment: its three-dimensional geometry and its sensitivity to control inputs. The system builds on neural radiance fields (NeRF), a technique that reconstructs 3D scenes from images by mapping spatial coordinates to color and density values. NJF extends this approach by learning not only the robot’s shape, but also a Jacobian field, a function that predicts how any point on the robot’s body moves in response to motor commands.
To train the model, the robot performs random motions while multiple cameras record the outcomes. No human supervision or prior knowledge of the robot’s structure is required — the system simply infers the relationship between control signals and motion by watching.
Once training is complete, the robot only needs a single monocular camera for real-time closed-loop control, running at about 12 Hertz. This allows it to continuously observe itself, plan, and act responsively. That speed makes NJF more viable than many physics-based simulators for soft robots, which are often too computationally intensive for real-time use.
In early simulations, even simple 2D fingers and sliders were able to learn this mapping using just a few examples. By modeling how specific points deform or shift in response to action, NJF builds a dense map of controllability. That internal model allows it to generalize motion across the robot’s body, even when the data are noisy or incomplete.
“What’s really interesting is that the system figures out on its own which motors control which parts of the robot,” says Li. “This isn’t programmed — it emerges naturally through learning, much like a person discovering the buttons on a new device.”
The future is soft
For decades, robotics has favored rigid, easily modeled machines — like the industrial arms found in factories — because their properties simplify control. But the field has been moving toward soft, bio-inspired robots that can adapt to the real world more fluidly. The trade-off? These robots are harder to model.
“Robotics today often feels out of reach because of costly sensors and complex programming. Our goal with Neural Jacobian Fields is to lower the barrier, making robotics affordable, adaptable, and accessible to more people. Vision is a resilient, reliable sensor,” says senior author and MIT Assistant Professor Vincent Sitzmann, who leads the Scene Representation group. “It opens the door to robots that can operate in messy, unstructured environments, from farms to construction sites, without expensive infrastructure.”
“Vision alone can provide the cues needed for localization and control — eliminating the need for GPS, external tracking systems, or complex onboard sensors. This opens the door to robust, adaptive behavior in unstructured environments, from drones navigating indoors or underground without maps to mobile manipulators working in cluttered homes or warehouses, and even legged robots traversing uneven terrain,” says co-author Daniela Rus, MIT professor of electrical engineering and computer science and director of CSAIL. “By learning from visual feedback, these systems develop internal models of their own motion and dynamics, enabling flexible, self-supervised operation where traditional localization methods would fail.”
While training NJF currently requires multiple cameras and must be redone for each robot, the researchers are already imagining a more accessible version. In the future, hobbyists could record a robot’s random movements with their phone, much like you’d take a video of a rental car before driving off, and use that footage to create a control model, with no prior knowledge or special equipment required.
The system doesn’t yet generalize across different robots, and it lacks force or tactile sensing, limiting its effectiveness on contact-rich tasks. But the team is exploring new ways to address these limitations: improving generalization, handling occlusions, and extending the model’s ability to reason over longer spatial and temporal horizons.
“Just as humans develop an intuitive understanding of how their bodies move and respond to commands, NJF gives robots that kind of embodied self-awareness through vision alone,” says Li. “This understanding is a foundation for flexible manipulation and control in real-world environments. Our work, essentially, reflects a broader trend in robotics: moving away from manually programming detailed models toward teaching robots through observation and interaction.”
This paper brought together the computer vision and self-supervised learning work from the Sitzmann lab and the expertise in soft robots from the Rus lab. Li, Sitzmann, and Rus co-authored the paper with CSAIL affiliates Annan Zhang SM ’22, a PhD student in electrical engineering and computer science (EECS); Boyuan Chen, a PhD student in EECS; Hanna Matusik, an undergraduate researcher in mechanical engineering; and Chao Liu, a postdoc in the Senseable City Lab at MIT.
The research was supported by the Solomon Buchsbaum Research Fund through MIT’s Research Support Committee, an MIT Presidential Fellowship, the National Science Foundation, and the Gwangju Institute of Science and Technology.
Pedestrians now walk faster and linger less, researchers find
City life is often described as “fast-paced.” A new study suggests that’s more true that ever.
The research, co-authored by MIT scholars, shows that the average walking speed of pedestrians in three northeastern U.S. cities increased 15 percent from 1980 to 2010. The number of people lingering in public spaces declined by 14 percent in that time as well.
The researchers used machine-learning tools to assess 1980s-era video footage captured by renowned urbanist William Whyte, in Boston, New York, and Philadelphia. They compared the old material with newer videos from the same locations.
“Something has changed over the past 40 years,” says MIT professor of the practice Carlo Ratti, a co-author of the new study. “How fast we walk, how people meet in public space — what we’re seeing here is that public spaces are working in somewhat different ways, more as a thoroughfare and less a space of encounter.”
The paper, “Exploring the social life of urban spaces through AI,” is published this week in the Proceedings of the National Academy of Sciences. The co-authors are Arianna Salazar-Miranda MCP ’16, PhD ’23, an assistant professor at Yale University’s School of the Environment; Zhuanguan Fan of the University of Hong Kong; Michael Baick; Keith N. Hampton, a professor at Michigan State University; Fabio Duarte, associate director of the Senseable City Lab; Becky P.Y. Loo of the University of Hong Kong; Edward Glaeser, the Fred and Eleanor Glimp Professor of Economics at Harvard University; and Ratti, who is also director of MIT’s Senseable City Lab.
The results could help inform urban planning, as designers seek to create new public areas or modify existing ones.
“Public space is such an important element of civic life, and today partly because it counteracts the polarization of digital space,” says Salazar-Miranda. “The more we can keep improving public space, the more we can make our cities suited for convening.”
Meet you at the Met
Whyte was a prominent social thinker whose famous 1956 book, “The Organization Man,” probing the apparent culture of corporate conformity in the U.S., became a touchstone of its decade.
However, Whyte spent the latter decades of his career focused on urbanism. The footage he filmed, from 1978 through 1980, was archived by a Brooklyn-based nonprofit organization called the Project for Public Spaces and later digitized by Hampton and his students.
Whyte chose to make his recording at four spots in the three cities combined: Boston’s Downtown Crossing area; New York City’s Bryant Park; the steps of the Metropolitan Museum of Art in New York, a famous gathering point and people-watching spot; and Philadelphia’s Chestnut Street.
In 2010, a group led by Hampton then shot new footage at those locations, at the same times of day Whyte had, to compare and contrast current-day dynamics with those of Whyte’s time. To conduct the study, the co-authors used computer vision and AI models to summarize and quantify the activity in the videos.
The researchers have found that some things have not changed greatly. The percentage of people walking alone barely moved, from 67 percent in 1980 to 68 percent in 2010. On the other hand, the percentage of individuals entering these public spaces who became part of a group declined a bit. In 1980, 5.5 percent of the people approaching these spots met up with a group; in 2010, that was down to 2 percent.
“Perhaps there’s a more transactional nature to public space today,” Ratti says.
Fewer outdoor groups: Anomie or Starbucks?
If people’s behavioral patterns have altered since 1980, it’s natural to ask why. Certainly some of the visible changes seem consistent with the pervasive use of cellphones; people organize their social lives by phone now, and perhaps zip around more quickly from place to place as a result.
“When you look at the footage from William Whyte, the people in public spaces were looking at each other more,” Ratti says. “It was a place you could start a conversation or run into a friend. You couldn’t do things online then. Today, behavior is more predicated on texting first, to meet in public space.”
As the scholars note, if groups of people hang out together slightly less often in public spaces, there could be still another reason for that: Starbucks and its competitors. As the paper states, outdoor group socializing may be less common due to “the proliferation of coffee shops and other indoor venues. Instead of lingering on sidewalks, people may have moved their social interactions into air-conditioned, more comfortable private spaces.”
Certainly coffeeshops were far less common in big cities in 1980, and the big chain coffeeshops did not exist.
On the other hand, public-space behavior might have been evolving all this time regardless of Starbucks and the like. The researchers say the new study offers a proof-of-concept for its method and has encouraged them to conduct additional work. Ratti, Duarte, and other researchers from MIT’s Senseable City Lab have turned their attention to an extensive survey of European public spaces in an attempt to shed more light on the interaction between people and the public form.
“We are collecting footage from 40 squares in Europe,” Duarte says. “The question is: How can we learn at a larger scale? This is in part what we’re doing.”
New machine-learning application to help researchers predict chemical properties
One of the shared, fundamental goals of most chemistry researchers is the need to predict a molecule’s properties, such as its boiling or melting point. Once researchers can pinpoint that prediction, they’re able to move forward with their work yielding discoveries that lead to medicines, materials, and more. Historically, however, the traditional methods of unveiling these predictions are associated with a significant cost — expending time and wear and tear on equipment, in addition to funds.
Enter a branch of artificial intelligence known as machine learning (ML). ML has lessened the burden of molecule property prediction to a degree, but the advanced tools that most effectively expedite the process — by learning from existing data to make rapid predictions for new molecules — require the user to have a significant level of programming expertise. This creates an accessibility barrier for many chemists, who may not have the significant computational proficiency required to navigate the prediction pipeline.
To alleviate this challenge, researchers in the McGuire Research Group at MIT have created ChemXploreML, a user-friendly desktop app that helps chemists make these critical predictions without requiring advanced programming skills. Freely available, easy to download, and functional on mainstream platforms, this app is also built to operate entirely offline, which helps keep research data proprietary. The exciting new technology is outlined in an article published recently in the Journal of Chemical Information and Modeling.
One specific hurdle in chemical machine learning is translating molecular structures into a numerical language that computers can understand. ChemXploreML automates this complex process with powerful, built-in "molecular embedders" that transform chemical structures into informative numerical vectors. Next, the software implements state-of-the-art algorithms to identify patterns and accurately predict molecular properties like boiling and melting points, all through an intuitive, interactive graphical interface.
"The goal of ChemXploreML is to democratize the use of machine learning in the chemical sciences,” says Aravindh Nivas Marimuthu, a postdoc in the McGuire Group and lead author of the article. “By creating an intuitive, powerful, and offline-capable desktop application, we are putting state-of-the-art predictive modeling directly into the hands of chemists, regardless of their programming background. This work not only accelerates the search for new drugs and materials by making the screening process faster and cheaper, but its flexible design also opens doors for future innovations.”
ChemXploreML is designed to to evolve over time, so as future techniques and algorithms are developed, they can be seamlessly integrated into the app, ensuring that researchers are always able to access and implement the most up-to-date methods. The application was tested on five key molecular properties of organic compounds — melting point, boiling point, vapor pressure, critical temperature, and critical pressure — and achieved high accuracy scores of up to 93 percent for the critical temperature. The researchers also demonstrated that a new, more compact method of representing molecules (VICGAE) was nearly as accurate as standard methods, such as Mol2Vec, but was up to 10 times faster.
“We envision a future where any researcher can easily customize and apply machine learning to solve unique challenges, from developing sustainable materials to exploring the complex chemistry of interstellar space,” says Marimuthu. Joining him on the paper is senior author and Class of 1943 Career Development Assistant Professor of Chemistry Brett McGuire.
Scientists apply optical pooled CRISPR screening to identify potential new Ebola drug targets
The following press release was issued today by the Broad Institute of MIT and Harvard.
Although outbreaks of Ebola virus are rare, the disease is severe and often fatal, with few treatment options. Rather than targeting the virus itself, one promising therapeutic approach would be to interrupt proteins in the human host cell that the virus relies upon. However, finding those regulators of viral infection using existing methods has been difficult and is especially challenging for the most dangerous viruses like Ebola that require stringent high-containment biosafety protocols.
Now, researchers at the Broad Institute and the National Emerging Infectious Diseases Laboratories (NEIDL) at Boston University have used an image-based screening method developed at the Broad to identify human genes that, when silenced, impair the Ebola virus’s ability to infect. The method, known as optical pooled screening (OPS), enabled the scientists to test, in about 40 million CRISPR-perturbed human cells, how silencing each gene in the human genome affects virus replication.
Using machine-learning-based analyses of images of perturbed cells, they identified multiple host proteins involved in various stages of Ebola infection that when suppressed crippled the ability of the virus to replicate. Those viral regulators could represent avenues to one day intervene therapeutically and reduce the severity of disease in people already infected with the virus. The approach could be used to explore the role of various proteins during infection with other pathogens, as a way to find new drugs for hard-to-treat infections.
The study appears in Nature Microbiology.
“This study demonstrates the power of OPS to probe the dependency of dangerous viruses like Ebola on host factors at all stages of the viral life cycle and explore new routes to improve human health,” said co-senior author Paul Blainey, a Broad core faculty member and professor in the Department of Biological Engineering at MIT.
Previously, members of the Blainey lab developed the optical pooled screening method as a way to combine the benefits of high-content imaging, which can show a range of detailed changes in large numbers of cells at once, with those of pooled perturbational screens, which show how genetic elements influence these changes. In this study, they partnered with the laboratory of Robert Davey at BU to apply optical pooled screening to Ebola virus.
The team used CRISPR to knock out each gene in the human genome, one at a time, in nearly 40 million human cells, and then infected each cell with Ebola virus. They next fixed those cells in place in laboratory dishes and inactivated them, so that the remaining processing could occur outside of the high-containment lab.
After taking images of the cells, they measured overall viral protein and RNA in each cell using the CellProfiler image analysis software, and to get even more information from the images, they turned to AI. With help from team members in the Eric and Wendy Schmidt Center at the Broad, led by study co-author and Broad core faculty member Caroline Uhler, they used a deep learning model to automatically determine the stage of Ebola infection for each single cell. The model was able to make subtle distinctions between stages of infection in a high-throughput way that wasn’t possible using prior methods.
“The work represents the deepest dive yet into how Ebola virus rewires the cell to cause disease, and the first real glimpse into the timing of that reprogramming,” said co-senior author Robert Davey, director of the National Emerging Infectious Diseases Laboratories at Boston University, and professor of microbiology at BU Chobanian and Avedisian School of Medicine. “AI gave us an unprecedented ability to do this at scale.”
By sequencing parts of the CRISPR guide RNA in all 40 million cells individually, the researchers determined which human gene had been silenced in each cell, indicating which host proteins (and potential viral regulators) were targeted. The analysis revealed hundreds of host proteins that, when silenced, altered overall infection level, including many required for viral entry into the cell.
Knocking out other genes enhanced the amount of virus within inclusion bodies, structures that form in the human cell to act as viral factories, and prevented the infection from progressing further. Some of these human genes, such as UQCRB, pointed to a previously unrecognized role for mitochondria in the Ebola virus infection process that could possibly be exploited therapeutically. Indeed, treating cells with a small molecule inhibitor of UQCRB reduced Ebola infection with no impact on the cell’s own health.
Other genes, when silenced, altered the balance between viral RNA and protein. For example, perturbing a gene called STRAP resulted in increased viral RNA relative to protein. The researchers are currently doing further studies in the lab to better understand the role of STRAP and other proteins in Ebola infection and whether they could be targeted therapeutically.
In a series of secondary screens, the scientists examined some of the highlighted genes’ roles in infection with related filoviruses. Silencing some of these genes interrupted replication of Sudan and Marburg viruses, which have high fatality rates and no approved treatments, so it’s possible a single treatment could be effective against multiple related viruses.
The study’s approach could also be used to examine other pathogens and emerging infectious diseases and look for new ways to treat them.
“With our method, we can measure many features at once and uncover new clues about the interplay between virus and host, in a way that’s not possible through other screening approaches,” said co-first author Rebecca Carlson, a former graduate researcher in the labs of Blainey and Nir Hacohen at the Broad and who co-led the work along with co-first author J.J. Patten at Boston University.
This work was funded in part by the Broad Institute, the National Human Genome Research Institute, the Burroughs Wellcome Fund, the Fannie and John Hertz Foundation, the National Science Foundation, the George F. Carrier Postdoctoral Fellowship, the Eric and Wendy Schmidt Center at the Broad Institute, the National Institutes of Health, and the Office of Naval Research.
Astronomers discover star-shredding black holes hiding in dusty galaxies
Astronomers at MIT, Columbia University, and elsewhere have used NASA’s James Webb Space Telescope (JWST) to peer through the dust of nearby galaxies and into the aftermath of a black hole’s stellar feast.
In a study appearing today in Astrophysical Journal Letters, the researchers report that for the first time, JWST has observed several tidal disruption events — instances when a galaxy’s central black hole draws in a nearby star and whips up tidal forces that tear the star to shreds, giving off an enormous burst of energy in the process.
Scientists have observed about 100 tidal disruption events (TDEs) since the 1990s, mostly as X-ray or optical light that flashes across relatively dust-free galaxies. But as MIT researchers recently reported, there may be many more star-shredding events in the universe that are “hiding” in dustier, gas-veiled galaxies.
In their previous work, the team found that most of the X-ray and optical light that a TDE gives off can be obscured by a galaxy’s dust, and therefore can go unseen by traditional X-ray and optical telescopes. But that same burst of light can heat up the surrounding dust and generate a new signal, in the form of infrared light.
Now, the same researchers have used JWST — the world’s most powerful infrared detector — to study signals from four dusty galaxies where they suspect tidal disruption events have occurred. Within the dust, JWST detected clear fingerprints of black hole accretion, a process by which material, such as stellar debris, circles and eventually falls into a black hole. The telescope also detected patterns that are strikingly different from the dust that surrounds active galaxies, where the central black hole is constantly pulling in surrounding material.
Together, the observations confirm that a tidal disruption event did indeed occur in each of the four galaxies. What’s more, the researchers conclude that the four events were products of not active black holes but rather dormant ones, which experienced little to no activity until a star happened to pass by.
The new results highlight JWST’s potential to study in detail otherwise hidden tidal disruption events. They are also helping scientists to reveal key differences in the environments around active versus dormant black holes.
“These are the first JWST observations of tidal disruption events, and they look nothing like what we’ve ever seen before,” says lead author Megan Masterson, a graduate student in MIT’s Kavli Institute for Astrophysics and Space Research. “We’ve learned these are indeed powered by black hole accretion, and they don’t look like environments around normal active black holes. The fact that we’re now able to study what that dormant black hole environment actually looks like is an exciting aspect.”
The study’s MIT authors include Christos Panagiotou, Erin Kara, Anna-Christina Eilers, along with Kishalay De of Columbia University and collaborators from multiple other institutions.
Seeing the light
The new study expands on the team’s previous work using another infrared detector — NASA’s Near-Earth Object Wide-field Infrared Survey Explorer (NEOWISE) mission. Using an algorithm developed by co-author Kishalay De of Columbia University, the team searched through a decade’s worth of data from the telescope, looking for infrared “transients,” or short peaks of infrared activity from otherwise quiet galaxies that could be signals of a black hole briefly waking up and feasting on a passing star. That search unearthed about a dozen signals that the group determined were likely produced by a tidal disruption event.
“With that study, we found these 12 sources that look just like TDEs,” Masterson says. “We made a lot of arguments about how the signals were very energetic, and the galaxies didn’t look like they were active before, so the signals must have been from a sudden TDE. But except for these little pieces, there was no direct evidence.”
With the much more sensitive capabilities of JWST, the researchers hoped to discern key “spectral lines,” or infrared light at specific wavelengths, that would be clear fingerprints of conditions associated with a tidal disruption event.
“With NEOWISE, it’s as if our eyes could only see red light or blue light, whereas with JWST, we’re seeing the full rainbow,” Masterson says.
A Bonafide signal
In their new work, the group looked specifically for a peak in infrared, that could only be produced by black hole accretion — a process by which material is drawn toward a black hole in a circulating disk of gas. This disk produces an enormous amount of radiation that is so intense that it can kick out electrons from individual atoms. In particular, such accretion processes can blast several electrons out from atoms of neon, and the resulting ion can transition, releasing infrared radiation at a very specific wavelength that JWST can detect.
“There’s nothing else in the universe that can excite this gas to these energies, except for black hole accretion,” Masterson says.
The researchers searched for this smoking-gun signal in four of the 12 TDE candidates they previously identified. The four signals include: the closest tidal disruption event detected to date, located in a galaxy some 130 million light years away; a TDE that also exhibits a burst of X-ray light; a signal that may have been produced by gas circulating at incredibly high speeds around a central black hole; and a signal that also included an optical flash, which scientists had previously suspected to be a supernova, or the collapse of a dying star, rather than tidal disruption event.
“These four signals were as close as we could get to a sure thing,” Masterson says. “But the JWST data helped us say definitively these are bonafide TDEs.”
When the team pointed JWST toward the galaxies of each of the four signals, in a program designed by De, they observed that the telltale spectral lines showed up in all four sources. These measurements confirmed that black hole accretion occurred in all four galaxies. But the question remained: Was this accretion a temporary feature, triggered by a tidal disruption and a black hole that briefly woke up to feast on a passing star? Or was this accretion a more permanent trait of “active” black holes that are always on? In the case of the latter, it would be less likely that a tidal disruption event had occurred.
To differentiate between the two possibilities, the team used the JWST data to detect another wavelength of infrared light, which indicates the presence of silicates, or dust in the galaxy. They then mapped this dust in each of the four galaxies and compared the patterns to those of active galaxies, which are known to harbor clumpy, donut-shaped dust clouds around the central black hole. Masterson observed that all four sources showed very different patterns compared to typical active galaxies, suggesting that the black hole at the center of each of the galaxies is not normally active, but dormant. If an accretion disk formed around such a black hole, the researchers conclude that it must have been a result of a tidal disruption event.
“Together, these observations say the only thing these flares could be are TDEs,” Masterson says.
She and her collaborators plan to uncover many more previously hidden tidal disruption events, with NEOWISE, JWST, and other infrared telescopes. With enough detections, they say TDEs can serve as effective probes of black hole properties. For instance, how much of a star is shredded, and how fast its debris is accreted and consumed, can reveal fundamental properties of a black hole, such as how massive it is and how fast it spins.
“The actual process of a black hole gobbling down all that stellar material takes a long time,” Masterson says. “It’s not an instantaneous process. And hopefully we can start to probe how long that process takes and what that environment looks like. No one knows because we just started discovering and studying these events.”
This research was supported, in part, by NASA.
Theory-guided strategy expands the scope of measurable quantum interactions
A new theory-guided framework could help scientists probe the properties of new semiconductors for next-generation microelectronic devices, or discover materials that boost the performance of quantum computers.
Research to develop new or better materials typically involves investigating properties that can be reliably measured with existing lab equipment, but this represents just a fraction of the properties that scientists could potentially probe in principle. Some properties remain effectively “invisible” because they are too difficult to capture directly with existing methods.
Take electron-phonon interaction — this property plays a critical role in a material’s electrical, thermal, optical, and superconducting properties, but directly capturing it using existing techniques is notoriously challenging.
Now, MIT researchers have proposed a theoretically justified approach that could turn this challenge into an opportunity. Their method reinterprets neutron scattering, an often-overlooked interference effect as a potential direct probe of electron-phonon coupling strength.
The procedure creates two interaction effects in the material. The researchers show that, by deliberately designing their experiment to leverage the interference between the two interactions, they can capture the strength of a material’s electron-phonon interaction.
The researchers’ theory-informed methodology could be used to shape the design of future experiments, opening the door to measuring new quantities that were previously out of reach.
“Rather than discovering new spectroscopy techniques by pure accident, we can use theory to justify and inform the design of our experiments and our physical equipment,” says Mingda Li, the Class of 1947 Career Development Professor and an associate professor of nuclear science and engineering, and senior author of a paper on this experimental method.
Li is joined on the paper by co-lead authors Chuliang Fu, an MIT postdoc; Phum Siriviboon and Artittaya Boonkird, both MIT graduate students; as well as others at MIT, the National Institute of Standards and Technology, the University of California at Riverside, Michigan State University, and Oak Ridge National Laboratory. The research appears this week in Materials Today Physics.
Investigating interference
Neutron scattering is a powerful measurement technique that involves aiming a beam of neutrons at a material and studying how the neutrons are scattered after they strike it. The method is ideal for measuring a material’s atomic structure and magnetic properties.
When neutrons collide with the material sample, they interact with it through two different mechanisms, creating a nuclear interaction and a magnetic interaction. These interactions can interfere with each other.
“The scientific community has known about this interference effect for a long time, but researchers tend to view it as a complication that can obscure measurement signals. So it hasn’t received much focused attention,” Fu says.
The team and their collaborators took a conceptual “leap of faith” and decided to explore this oft-overlooked interference effect more deeply.
They flipped the traditional materials research approach on its head by starting with a multifaceted theoretical analysis. They explored what happens inside a material when the nuclear interaction and magnetic interaction interfere with each other.
Their analysis revealed that this interference pattern is directly proportional to the strength of the material’s electron-phonon interaction.
“This makes the interference effect a probe we can use to detect this interaction,” explains Siriviboon.
Electron-phonon interactions play a role in a wide range of material properties. They affect how heat flows through a material, impact a material’s ability to absorb and emit light, and can even lead to superconductivity.
But the complexity of these interactions makes them hard to directly measure using existing experimental techniques. Instead, researchers often rely on less precise, indirect methods to capture electron-phonon interactions.
However, leveraging this interference effect enables direct measurement of the electron-phonon interaction, a major advantage over other approaches.
“Being able to directly measure the electron-phonon interaction opens the door to many new possibilities,” says Boonkird.
Rethinking materials research
Based on their theoretical insights, the researchers designed an experimental setup to demonstrate their approach.
Since the available equipment wasn’t powerful enough for this type of neutron scattering experiment, they were only able to capture a weak electron-phonon interaction signal — but the results were clear enough to support their theory.
“These results justify the need for a new facility where the equipment might be 100 to 1,000 times more powerful, enabling scientists to clearly resolve the signal and measure the interaction,” adds Landry.
With improved neutron scattering facilities, like those proposed for the upcoming Second Target Station at Oak Ridge National Laboratory, this experimental method could be an effective technique for measuring many crucial material properties.
For instance, by helping scientists identify and harness better semiconductors, this approach could enable more energy-efficient appliances, faster wireless communication devices, and more reliable medical equipment like pacemakers and MRI scanners.
Ultimately, the team sees this work as a broader message about the need to rethink the materials research process.
“Using theoretical insights to design experimental setups in advance can help us redefine the properties we can measure,” Fu says.
To that end, the team and their collaborators are currently exploring other types of interactions they could leverage to investigate additional material properties.
“This is a very interesting paper,” says Jon Taylor, director of the neutron scattering division at Oak Ridge National Laboratory, who was not involved with this research. “It would be interesting to have a neutron scattering method that is directly sensitive to charge lattice interactions or more generally electronic effects that were not just magnetic moments. It seems that such an effect is expectedly rather small, so facilities like STS could really help develop that fundamental understanding of the interaction and also leverage such effects routinely for research.”
This work is funded, in part, by the U.S. Department of Energy and the National Science Foundation.
Professor Emeritus Keith Johnson, pioneering theorist in materials science and independent filmmaker, dies at 89
MIT Professor Emeritus Keith H. Johnson, a quantum physicist who pioneered the use of theoretical methods in materials science and later applied his expertise to independent filmmaking, died in June in Cambridge, Massachusetts. He was 89.
A professor in MIT’s Department of Materials Science and Engineering (DMSE), Johnson used first principles to understand how electrons behave in materials — that is, he turned to fundamental laws of nature to calculate their behavior, rather than relying solely on experimental data. This approach gave scientists deeper insight into materials before they were made in a lab — helping lay the groundwork for today’s computer-driven methods of materials discovery.
DMSE Professor Harry Tuller, who collaborated with Johnson in the early 1980s, notes that while first-principles calculations are now commonplace, they were unusual at the time.
“Solid-state physicists were largely focused on modeling the electronic structure of materials like semiconductors and metals using extended wave functions,” Tuller says, referring to mathematical descriptions of electron behavior in crystals — a much quicker method. “Keith was among the minority that took a more localized chemical approach.”
That localized approach allowed Johnson to better examine materials with tiny imperfections called defects, such as in zinc oxide. His methods advanced the understanding of materials used in devices like gas sensors and water-splitting systems for hydrogen fuel. It also gave him deeper insight into complex systems such as superconductors — materials that conduct electricity without resistance — and molecular materials like “buckyballs.”
Johnson’s curiosity took creative form in 2001’s “Breaking Symmetry,” a sci-fi thriller he wrote, produced, and directed. Published on YouTube in 2020, it has been viewed more than 4 million times.
Trailblazing theorist at DMSE
Born in Reading, Pennsylvania, in 1936, Johnson showed an early interest in science. “After receiving a chemistry set as a child, he built a laboratory in his parents’ basement,” says his wife, Franziska Amacher-Johnson. “His early experiments were intense — once prompting an evacuation of the house due to chemical fumes.”
He earned his undergraduate degree in physics at Princeton University and his doctorate from Temple University in 1965. He joined the MIT faculty in 1967, in what was then called the Department of Metallurgy and Materials Science, and worked there for nearly 30 years.
His early use of theory in materials science led to more trailblazing. To model the behavior of electrons in small clusters of atoms — such as material surfaces, boundaries between different materials called interfaces, and defects — Johnson used cluster molecular orbital calculations, a quantum mechanical technique that focuses on how electrons behave in tightly grouped atomic structures. These calculations offered insight into how defects and boundaries influence material performance.
“This coupled very nicely with our interests in understanding the roles of bulk defects, interface and surface energy states at grain boundaries and surfaces in metal oxides in impacting their performance in various devices,” Tuller says.
In one project, Johnson and Tuller co-advised a PhD student who conducted both experimental testing of zinc oxide devices and theoretical modeling using Johnson’s methods. At the time, such close collaboration between experimentalists and theorists was rare. Their work led to a “much clearer and advanced understanding of how the nature of defect states formed at interfaces impacted their performance, long before this type of collaboration between experimentalists and theorists became what is now the norm,” Tuller said.
Johnson’s primary computational tool was yet another innovation, called the scattered wave method (also known as Xα multiple scattering). Though the technique has roots in mid-20th century quantum chemistry and condensed matter physics, Johnson was a leading figure in adapting it to materials applications.
Brian Ahern PhD ’84, one of Johnson’s former students, recalls the power of his approach. In 1988, while evaluating whether certain superconducting materials could be used in a next-generation supercomputer for the Department of Defense, Ahern interviewed leading scientists across the country. Most shared optimistic assessments — except Johnson. Drawing on deep theoretical calculations, Johnson showed that the zero-resistance conditions required for such a machine were not realistically achievable with the available materials.
“I reported Johnson’s findings, and the Pentagon program was abandoned, saving millions of dollars,” Ahern says.
From superconductors to screenplays
Johnson remained captivated by superconductors. These materials can conduct electricity without energy loss, making them crucial to technologies such as MRI machines and quantum computers. But they typically operate at cryogenic temperatures, requiring costly equipment. When scientists discovered so-called high-temperature superconductors — materials that worked at comparatively warmer, but still very cold (-300 degrees Fahrenheit), temperatures — a global race kicked off to understand their behavior and look for superconductors that could function at room temperature.
Using the theoretical tools he had earlier developed, Johnson proposed that vibrations of small molecular units were responsible for superconductivity — a departure from conventional thinking about what caused superconductivity. In a 1992 paper, he showed that the model could apply to a range of materials, including ceramics and buckminsterfullerene, nicknamed buckyballs because its molecules resemble architect Buckminster Fuller’s geodesic domes. Johnson predicted that room-temperature superconductivity was unlikely, because the materials needed to support it would be too unstable to work reliably.
That didn’t stop him from imagining scientific breakthroughs in fiction. A consulting trip to Russia after the fall of the Soviet Union sparked Johnson’s interest in screenwriting. Among his screenplays was “Breaking Symmetry,” about a young astrophysicist at a fictionalized MIT who discovers secret research on a radical new energy technology. When a Hollywood production deal fell through, Johnson decided to fund and direct the film himself — and even created its special effects.
Even after his early retirement from MIT, in 1996, Johnson continued to pursue research. In 2021, he published a paper on water nanoclusters in space and their possible role in the origins of life, suggesting that their properties could help explain cosmic phenomena. He also used his analytical tools to propose visual, water-based models for dark matter and dark energy — what he called “quintessential water.”
In his later years, Johnson became increasingly interested in presenting scientific ideas through images and intuition rather than dense equations, believing that nature should be understandable without complex mathematics, Amacher-Johnson says. He embraced multimedia and emerging digital tools — including artificial intelligence — to share his ideas. Several of his presentations can be found on his YouTube channel.
“He never confined himself to a single field,” Amacher-Johnson explains. “Physics, chemistry, biology, cosmology — all were part of his unified vision of understanding the universe.”
In addition to Amacher-Johnson, Johnson is survived by his daughter.
Adhesive inspired by hitchhiking sucker fish sticks to soft surfaces underwater
Inspired by a hitchhiking fish that uses a specialized suction organ to latch onto sharks and other marine animals, researchers from MIT and other institutions have designed a mechanical adhesive device that can attach to soft surfaces underwater or in extreme conditions, and remain there for days or weeks.
This device, the researchers showed, can adhere to the lining of the GI tract, whose mucosal layer makes it very difficult to attach any kind of sensor or drug-delivery capsule. Using their new adhesive system, the researchers showed that they could achieve automatic self-adhesion, without motors, to deliver HIV antiviral drugs or RNA to the GI tract, and they could also deploy it as a sensor for gastroesophageal reflux disease (GERD). The device can also be attached to a swimming fish to monitor aquatic environments.
The design is based on the research team’s extensive studies of the remora’s sucker-like disc. These discs have several unique properties that allow them to adhere tightly to a variety of hosts, including sharks, marlins, and rays. However, how remoras maintain adhesion to soft, dynamically shifting surfaces remains largely unknown.
Understanding the fundamental physics and mechanics of how this part of the fish sticks to another organism helped us to establish the underpinnings of how to engineer a synthetic adhesive system,” says Giovanni Traverso, an associate professor of mechanical engineering at MIT, a gastroenterologist at Brigham and Women’s Hospital, an associate member of the Broad Institute of MIT and Harvard, and the senior author of the study.
MIT research scientist Ziliang (Troy) Kang is the lead author of the study, which appears today in Nature. The research team also includes authors from Brigham and Women’s Hospital, the Broad Institute, and Boston College.
Inspired by nature
Most protein and RNA drugs can’t be taken orally because they will be broken down before they can be absorbed into the GI tract. To overcome that, Traverso’s lab is working on ingestible devices that can be swallowed and then gradually release their payload over days, weeks, or even longer.
One major obstacle is that the digestive tract is lined with a slippery mucosal membrane that is constantly regenerating and is difficult for any device to stick to. Furthermore, any device that manages to attach to this lining is likely to be dislodged by food or liquids moving through the tract.
To find a solution to these challenges, the MIT team looked to the remora, also known as the sucker fish, which clings to its hosts for free transportation and access to food scraps. To explore how the remora attaches itself to dynamic, soft surfaces so strongly, Traverso’s teamed up with Christopher Kenaley, an associate professor of biology at Boston College who studies remoras and other fish.
Their studies revealed that the remora’s ability to stick to its host depends on a few different features. First, the large suction disc creates adhesion through pressure-based suction, just like a plunger. Additionally, each disc is divided into individual small adhesive compartments by rows of plates called lamellae wrapped in soft tissue. These compartments can independently create additional suction on nonhomogeneous soft surfaces.
There are nine species of remora, and in each one, these rows of lamellae are aligned a little bit differently — some are exclusively parallel, while others form patterns with rows tilted at different angles. These differences, the researchers found, could be the key to elucidating each species’ evolutionary adaptation to its host.
Remora albescens, a unique species that exhibits mucoadhesion in the oral cavity of rays, inspired the team to develop devices with enhanced adhesion to soft surfaces with its unparallel, highly tilted lamellae orientation. Other remora species, which attach to high-speed swimmers such as marlins and swordfish, tend to have highly parallel orientations, which help the hitchhikers slide without losing adhesion as they are rapidly dragged through the water. Still other species, which have a mix of parallel and angled rows, can attach to a variety of hosts.
Tiny spines that protrude from the lamellae help to achieve additional adhesion by interlocking with the host tissue. These spines, also called spinules, are several hundred microns long and grasp onto the tissue with minimal invasiveness.
“If the compartment suction is subjected to a shear force, the friction enabled by the mechanical interlocking of the spinules can help to maintain the suction,” Kang says.
Watery environments
By mimicking these anatomical features, the MIT team was able to create a device with similarly strong adhesion for a variety of applications in underwater environments.
The researchers used silicone rubber and temperature-responsive smart materials to create their adhesive device, which they call MUSAS (for “mechanical underwater soft adhesion system”). The fully passive, disc-shaped device contains rows of lamellae similar to those of the remora, and can self-adhere to the mucosal lining, leveraging GI contractions. The researchers found that for their purposes, a pattern of tilted rows was the most effective.
Within the lamellae are tiny microneedle-like structures that mimic the spinules seen in the remora. These tiny spines are made of a shape memory alloy that is activated when exposed to body temperatures, allowing the spines to interlock with each other and grasp onto the tissue surface.
The researchers showed that this device could attach to a variety of soft surfaces, even in wet or highly acidic conditions, including pig stomach tissue, nitrile gloves, and a tilapia swimming in a fish tank. Then, they tested the device for several different applications, including aquatic environmental monitoring. After adding a temperature sensor to the device, the researchers showed that they could attach the device to a fish and accurately measure water temperature as the fish swam at high speed.
To demonstrate medical applications, the researchers incorporated an impedance sensor into the device and showed that it could adhere to the esophagus in an animal model, which allowed them to monitor reflux of gastric fluid. This could offer an alternative to current sensors for GERD, which are delivered by a tube placed through the nose or mouth and pinned to the lower part of the esophagus.
They also showed that the device could be used for sustained release of two different types of therapeutics, in animal tests. First, they showed that they could integrate an HIV drug called cabotegravir into the materials that make up the device (polycaprolactone and silicone). Once adhered to the lining of the stomach, the drug gradually diffused out of the device, over a period of one week.
Cabotegravir is one of the drugs used for HIV PrEP — pre-exposure prophylaxis — as well as treatment of HIV. These treatments are usually given either as a daily pill or an injection administered every one to two months.
The researchers also created a version of the device that could be used for delivery of larger molecules such as RNA. For this kind of delivery, the researchers incorporated RNA into the microneedles of the lamellae, which could then inject them into the lining of the stomach. Using RNA encoding the gene for luciferase, a protein that emits light, the researchers showed that they could successfully deliver the gene to cells of the cheek or the esophagus.
The researchers now plan to adapt the device for delivering other types of drugs, as well as vaccines. Another possible application is using the devices for electrical stimulation, which Traverso’s lab has previously shown can activate hormones that regulate appetite.
The research was funded, in part, by the Gates Foundation, MIT’s Department of Mechanical Engineering, Brigham and Women’s Hospital, and the Advanced Research Projects Agency for Health.