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Meet the leader of the Department of Biology’s all-important “kitchen”
Early mornings in the halls of Building 68 feature the sounds of rolling wheels on big metal carts, the rattling of glassware, the whooshing of faucets, and the clanking of autoclaves.
These aren’t the sounds of researchers at work, but rather those of keeping the labs sterilized and stocked with the sundries of research: pipette tips, test tubes, flasks, petri dishes, and more.
Orchestrating this sunrise cacophony and the staff that undertakes it is Karen O’Leary, lab associate and acting supervisor in the Glassware Sterilization Facility, also known as the “kitchen.”
Thanks, in part, to O’Leary’s proactivity and hard work, the kitchen staff were recently recognized with an MIT Excellence Award in 2025 for exceptional contributions in service of the community.
“My goal is to get the scientists everything they need to do their research,” O’Leary says. “I’m good at what I do.”
O’Leary admits she did not always possess such confidence. In almost 40 years at MIT, O’Leary has grown into this critical role for the department, and the department itself has evolved, moving into a brand-new building and away from previously standard practices like submerging equipment in acid for sterilization.
From rookie to running the show
On Sept. 7, 1987, Karen O’Leary joined the MIT community as a staff member for the first time. The 18-year-old was fresh from vocational high school, where she studied cosmetology but felt too shy to pursue that as a career. She was also nervous about joining a research institution.
“When I started, I didn’t even know what a beaker was,” she recalls.
Too embarrassed to admit in her interview that she couldn’t remember her brand-new home phone number, “I just made one up.” Fortunately, this didn’t prevent her from getting the job, where she worked under the mentorship of Thelma Watkins, who would retire in 1996 after 21 years at MIT. Watkins was critical for instilling a good work ethic and boosting O’Leary’s confidence.
“She taught me to show up every day, and work hard, and laugh,” O’Leary says.
Even now, O’Leary continues to bring joy to that daily diligence, for herself and for her staff.
“Karen is always on top of things,” says longtime friend and fellow Lab Associate AnnMarie Budhai. “She doesn’t refuse work and always goes above and beyond.”
Facilities and Operations Manager Cesar Duarte says that O’Leary’s long tenure, support, and knowledge have been invaluable as he transitioned into his role in Building 68 starting in 2023.
“Karen is one of those people who makes everything around her run more smoothly and more pleasantly,” Duarte says.
Better, faster, safer
Although some might consider it drudgery, O’Leary says that washing glassware is her favorite task.
“I like that when I wash, I can see the job is complete at the end of the day,” she says.
Although washing glassware is a perennial task, safety and efficiency have come a long way in the past 38 years. More-effective autoclaves and dishwashers have eliminated steps like steaming to dissolve agar solvents before autoclaving, and scrubbing individual test tubes before washing.
O’Leary was working for the department in 2011 when Building 68 piloted a new approach to MIT’s management of regulated medical waste (RMW), such as petri dishes, blood, and needles — the new system, which is cheaper and produces less waste, is now used by all departments at MIT that produce RMW.
“EHS [the Environment, Health and Safety Office] has come really far — I’m glad we got away from acid,” O’Leary notes of the bygone era of submerging glass pipettes for sterilization. “Back then, no one knew of a better way.”
Other tasks include cleaning velvets, which are used for replicating bacterial colonies on petri dishes, and pouring agar plates.
“Everyone knows how to do almost every job, so we can take turns doing different tasks,” O’Leary says. “If you get sick, there’s always someone to cover.”
All in the family
For O’Leary, kinship with MIT has spanned generations. O’Leary was raised in Weymouth, Massachusetts, by a father who worked at MIT as a supervisor in the sheet metal shop. Having raised children of her own, now grown, O’Leary came to greatly appreciate the flexibility her job has granted her.
“I’ve had great work-family balance here,” she says. Even though she’s often at work more than an hour before the researchers that the kitchen serves, “The hours are great, and with MIT Health right across the street, it was easy to take everyone to doctors’ appointments.”
She’s also gained a chosen family at MIT, spending breaks at work taking long walks along the Charles River, “talking about anything and everything” with colleagues like Budhai and Lab Aide Janet Katin.
“We really grew up together,” she says.
Working at MIT has provided O’Leary with support and community, and she’d like to pay it forward. In addition to strolling with colleagues, she hits the gym to help maintain the energy required for her highly active work.
“I don’t like sitting around,” she says.
In addition to maintaining her stamina at work, she hopes that taking care of herself will keep her actively involved if she ever has grandchildren, and enable her to help neighborhood kids when she someday retires.
“I owe a lot to MIT,” she says. “I have been allowed to work hard and get satisfaction and have been appreciated and given space to care for my family.”
O’Leary returns this care to the Department of Biology in spades.
“It’s an understatement to say that Biology is lucky to have her,” says Duarte. “Karen’s overflowing energy, attention to detail, and care for the Biology research community are nothing short of amazing.”
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Companies working at the frontier of aerospace, energy, and computing are constantly looking for new materials to improve performance. But in order to understand how those materials will actually behave once they’re inside rockets or on computer chips, companies first have to make the material and then test it. That’s because even the most powerful simulation techniques struggle to model the complex chemical arrangements in most of today’s solid materials. The problem adds costs and time to materials innovation.
Now a team of MIT researchers has created a way to accurately model the behavior of metals, regardless of the complexity of their chemical arrangement. At the center of the approach are machine-learning models that make simulations of materials faster and more accurate. The researchers improved those models by building training datasets that capture the diversity of atomic environments in chemically disordered materials.
In a new paper in Sciences Advances, the researchers showed their approach could be used to accurately predict material properties for a diverse group of metal alloys under a range of conditions. They also showed how the approach could be used to develop new materials, especially in scenarios where experimentation is expensive.
“The focus of the paper is metallic alloys, which is the field I work in, but this could be adapted to other types of materials, like semiconductors,” says senior author Rodrigo Freitas, MIT’s TDK Career Development Professor in Materials Science and Engineering. “This is not specific to any one application — you could use this approach to create new sustainable steels, new materials for aerospace, and more. That’s what makes this exciting.”
Joining Freitas on the paper are first author Killian Sheriff PhD ’26; MIT PhD students Daniel Xiao and Yifan Cao; and University of Sheffield Senior Lecturer Lewis R. Owen.
Modeling metals
Material properties are mostly determined by the internal arrangement of their chemical elements. Even if two materials have the same mix of chemical elements, different chemical arrangements can make the difference between a brittle material and one that deforms without breaking.
Capturing that distinction requires simulating materials atom by atom. To do that, researchers rely on models that describe how atoms interact with each other. Over the last two decades, machine learning has become the most accurate way to build those models. Such models work well when the chemical arrangements inside materials follow highly ordered patterns, but that’s not the case with most solid materials, whose atomic chemical arrangements are disordered and vary from one region to another.
“The real challenge in our field is modelling these chemically disordered phases,” Freitas says. “Chemical disorder means there’s a huge variety of local chemical environments, which is hard for the machine-learning model to learn. This is a problem because every single metal we use in practice is chemically disordered.”
The problem comes down to a lack of representative training data for those atom-by-atom simulations. The current leading approach for creating such data works by brute force, often requiring more than 100,000 hours of computation to create the training data for a single material. Even then, it does not transfer well when researchers change the material’s composition.
In previous work, Freitas’ group had developed a way to measure the chemical complexity of solid materials by analyzing the frequency and spacing of tiny groups of atoms. For this study, the researchers used that capability to build better training datasets. They used a mathematical approach known as information theory to generate training datasets that capture a wider variety of local chemical environments inside disordered materials. The method works by swapping out atoms from samples to reduce repetition and expose the model to chemical environments it might otherwise miss.
“We kept optimizing the training set so it captured as many different local environments as possible,” Freitas says. “If the same kind of environment showed up many times, we replaced redundant examples with ones the model hadn’t seen before. That makes the training set much more informative because each example adds something new.”
When trained on the researchers’ datasets, the models predicted material properties more accurately than models trained using random sampling or another popular sampling method.
“The starting point for all these atom-by-atom simulations is: Are you able to accurately describe the chemical bond between atoms?” Freitas explains. “If not, it can still teach you about materials in general, but it doesn’t tell you what will happen to specific materials in the real world. This approach makes the simulations high fidelity in terms of their chemistry, to better reflect what’s happening to materials.”
The researchers applied their technique to create machine-learning training datasets for a group of chemically diverse metal alloys. Using a set of machine-learning models, they showed the models trained on their datasets are more accurate than much larger models created by companies like Google and Microsoft.
“We got to a point where we were convinced it worked without using these expensive brute-force methods,” Freitas says. “I told Killian, ‘This is a good paper. But if you can show that simulations with these models can now accurately predict useful materials properties, then it becomes a very good paper.’ Killian took that to heart and tested this as widely as he could.”
Sheriff worked with Xiao and Cao to test the approach across different alloys and properties. The team also drew on Owen’s experimental data to compare the simulations against real measurements of atomic ordering in alloys.
From the lab to industry
The method works, in part, by capturing hidden patterns in the sample data. The researchers describe the patterns in the paper as “subtle energetic biases toward certain local chemical configurations.”
Those small energetic differences matter because they determine which phases form in an alloy, how those phases change with temperature and composition, and ultimately which properties the material will have. As one test, Daniel Xiao led simulations showing that the team’s models could predict phase diagrams that closely matched experimental data. Phase diagrams map which phases are stable across different temperatures and chemical compositions, and they are a central tool for designing and processing alloys.
“Phase diagrams are one of the main ways people connect materials modeling to real processing decisions,” Freitas says. “If you are welding, casting, or heat-treating an alloy, you need to know which phases are likely to form under different conditions. Our goal is to make these kinds of predictions accurate enough, and accessible enough, that they become part of how people design materials.”
The researchers are now using the approach to study how changing an alloy’s composition affects mechanical properties and radiation tolerance, with the goal of designing materials that remain strong and damage-tolerant in harsh environments. They are also working to make the method easier to use with the kinds of tools and workflows materials engineers already rely on.
“Industry isn’t going to change the way they do things if what you’re creating doesn’t fit into their existing operating procedures,” Freitas says. “The goal is to make these predictions useful in the places where materials decisions are actually made.”
The research was supported by the U.S. Air Force Office of Scientific Research.
